View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_156 (Length: 274)

Name: NF11309A_low_156
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_156
NF11309A_low_156
[»] chr1 (16 HSPs)
chr1 (11-274)||(11351597-11351860)
chr1 (11-274)||(6784126-6784389)
chr1 (53-274)||(20639438-20639659)
chr1 (11-226)||(21515101-21515314)
chr1 (11-264)||(32988886-32989141)
chr1 (18-113)||(2536489-2536584)
chr1 (11-144)||(44839857-44839990)
chr1 (40-168)||(51080701-51080829)
chr1 (11-77)||(52823473-52823539)
chr1 (33-113)||(39648379-39648459)
chr1 (45-109)||(5811388-5811452)
chr1 (55-113)||(2114365-2114423)
chr1 (55-113)||(3601265-3601323)
chr1 (54-111)||(26418788-26418845)
chr1 (54-111)||(32108435-32108492)
chr1 (55-113)||(17321884-17321942)
[»] chr2 (5 HSPs)
chr2 (11-274)||(29894321-29894584)
chr2 (11-274)||(24543061-24543324)
chr2 (11-266)||(36364896-36365151)
chr2 (11-165)||(40287017-40287171)
chr2 (67-142)||(12555415-12555490)
[»] chr3 (15 HSPs)
chr3 (11-274)||(51976608-51976871)
chr3 (11-274)||(36684753-36685016)
chr3 (11-273)||(8705561-8705823)
chr3 (11-273)||(9057448-9057710)
chr3 (11-232)||(45736356-45736577)
chr3 (14-264)||(4978417-4978668)
chr3 (49-193)||(49758956-49759100)
chr3 (84-240)||(26390800-26390956)
chr3 (41-165)||(38998864-38998988)
chr3 (11-108)||(47165345-47165442)
chr3 (11-165)||(37796562-37796716)
chr3 (54-111)||(32073607-32073664)
chr3 (11-78)||(26390564-26390631)
chr3 (66-122)||(20916409-20916465)
chr3 (66-122)||(20925371-20925427)
[»] chr8 (5 HSPs)
chr8 (11-274)||(18481081-18481344)
chr8 (11-144)||(26440784-26440917)
chr8 (41-242)||(32536156-32536357)
chr8 (11-113)||(7251115-7251217)
chr8 (42-111)||(11911395-11911464)
[»] chr4 (10 HSPs)
chr4 (11-274)||(43989258-43989520)
chr4 (11-254)||(19315890-19316132)
chr4 (11-107)||(43813171-43813267)
chr4 (16-113)||(1394134-1394232)
chr4 (71-113)||(17283581-17283623)
chr4 (54-111)||(13200849-13200906)
chr4 (54-111)||(47783000-47783057)
chr4 (69-113)||(9633067-9633111)
chr4 (55-113)||(35096917-35096975)
chr4 (65-113)||(1479285-1479333)
[»] chr6 (5 HSPs)
chr6 (11-274)||(942541-942804)
chr6 (11-113)||(4513081-4513183)
chr6 (40-111)||(19047098-19047169)
chr6 (13-111)||(13757503-13757601)
chr6 (54-111)||(15950809-15950866)
[»] chr7 (11 HSPs)
chr7 (11-263)||(23820382-23820634)
chr7 (11-273)||(24808771-24809014)
chr7 (11-144)||(21118373-21118505)
chr7 (9-113)||(40901803-40901907)
chr7 (55-111)||(10325110-10325166)
chr7 (65-113)||(12980739-12980787)
chr7 (55-114)||(20492488-20492547)
chr7 (54-111)||(29526837-29526894)
chr7 (57-111)||(8321192-8321246)
chr7 (54-111)||(21588151-21588208)
chr7 (59-139)||(42029863-42029943)
[»] chr5 (11 HSPs)
chr5 (11-207)||(41197356-41197552)
chr5 (11-274)||(36779403-36779663)
chr5 (11-141)||(30376427-30376557)
chr5 (12-168)||(34905529-34905685)
chr5 (11-63)||(12378608-12378660)
chr5 (41-157)||(14856952-14857068)
chr5 (11-113)||(12714847-12714949)
chr5 (11-113)||(12776078-12776180)
chr5 (20-113)||(29985437-29985530)
chr5 (11-72)||(39714874-39714935)
chr5 (65-113)||(34530-34578)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-113)||(48111-48215)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 11351597 - 11351860
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11351597 acatcatcataaacgtggaagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 11351696  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351697 tctgaaaattacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 11351796  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351797 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 11351860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 6784389 - 6784126
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||||||||| || ||| ||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  6784389 acattatcataaacgtggaagctagtatgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagt 6784290  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  6784289 tctgaaaataacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagactt 6784190  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    ||||||||||||||||||||||||||||||| |||||| || || |||||||||||||||||||    
T  6784189 gcaatccaaaacaaaatcaacattgtcataacgaagattagtcacccattgtagtgccgtgtga 6784126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 20639659 - 20639438
Alignment:
Q  53 ctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctgaataa 152  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataa 20639560  T
Q  153 tacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagc 252  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  20639559 tacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataatgaagatcagc 20639460  T
Q  253 catccattgtagtgccgtgtga 274  Q
    || ||||||||||||| |||||    
T  20639459 cacccattgtagtgccatgtga 20639438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 21515314 - 21515101
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||    
T  21515314 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagt 21515217  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| |||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21515216 tctgaaaattacattcgaacaactgcctacaaacctgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagactt 21515117  T
Q  211 gcaatccaaaacaaaa 226  Q
    ||||||||||||||||    
T  21515116 gcaatccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 32988886 - 32989141
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattga----actcgacatga 106  Q
    ||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||    ||||| |||||||||||  |    |||||||||||    
T  32988886 acatcatcataaacgcggaagctagcatgagatggggctaccctaactaattcatgagcgaaa--attggcttgcctcctatatatataactcgacatga 32988983  T
Q  107 gagttctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacag 206  Q
    |||||||  ||  |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||     
T  32988984 gagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatcacgtaagtttaaattaaaacgttcaacaacat 32989083  T
Q  207 acttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag 264  Q
    ||||| ||||| |||||||||| |||| |||||||||||||| | ||| |||||||||    
T  32989084 acttggaatccgaaacaaaatccacatcgtcataatgaagattaaccacccattgtag 32989141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 2536489 - 2536584
Alignment:
Q  18 cataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2536489 cataaacatgggagctagcatgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 2536584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 44839857 - 44839990
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||    
T  44839857 acattatcataaacgtaggagctagcattagatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagt 44839956  T
Q  111 tctagaaactacaatcgaacaactgtctacaagc 144  Q
    |||  ||||||   || ||||| |||||||||||    
T  44839957 tctgaaaactattgtcaaacaattgtctacaagc 44839990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 51080701 - 51080829
Alignment:
Q  40 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 139  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  ||||||||||||    
T  51080701 agatggggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtcta 51080800  T
Q  140 caagcctgaataatacaacctagttcact 168  Q
    || ||   |||||||||||| ||||||||    
T  51080801 catgcagtaataatacaaccaagttcact 51080829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 52823473 - 52823539
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccat 77  Q
    |||||||| ||||| | |||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  52823473 acatcatcgtaaacataggagttagtatgagatggagctaccctaactaattcatgagcgaccccat 52823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 39648379 - 39648459
Alignment:
Q  33 tagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    ||||||||||||||||||||  |||||||||||||||||||  ||| | ||| || ||||| ||||||||| |||||||||    
T  39648379 tagcatgagatggggctacctgagctaattcatgagcgacctaattagcttgacttctattaaactcgacacgagagttct 39648459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 5811452 - 5811388
Alignment:
Q  45 gggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagag 109  Q
    ||||| || ||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||    
T  5811452 gggctgccttagctaattaatgagctaccccatttgtttgtctcctattaaactcgacatgagag 5811388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 2114423 - 2114365
Alignment:
Q  55 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    ||||||||| |||||||||||||| | || | |||| ||||||||||||||||||||||    
T  2114423 agctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttct 2114365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 3601265 - 3601323
Alignment:
Q  55 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||| || ||||| ||| |||| | ||||||||||||||||||||||||||||||||    
T  3601265 agctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttct 3601323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 26418788 - 26418845
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  26418788 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 32108492 - 32108435
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  32108492 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 17321942 - 17321884
Alignment:
Q  55 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||| || ||||| |||| ||| | ||||||||| ||||||||||||||||||||||    
T  17321942 agctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttct 17321884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 29894321 - 29894584
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29894321 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 29894420  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894421 tctgaaaattacaatcgaacaactgtctacaagcctgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 29894520  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29894521 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgtcgtgtga 29894584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 24543324 - 24543061
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  24543324 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagt 24543225  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543224 tctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 24543125  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24543124 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgtcgtgtga 24543061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 36365151 - 36364896
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  36365151 acatcaccataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagt 36365052  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  |||  ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36365051 tctgaaaatgacaatcgaacaactgcctacaagtatgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagactt 36364952  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 266  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36364951 ggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtg 36364896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 40287017 - 40287171
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||| |  || | ||| || ||||||||||||||| ||||||||||||| ||||||||| | ||||||| |||| |||| |||||||||||    
T  40287017 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagt 40287116  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttc 165  Q
    | |  ||||||   |  |||||||||||||| ||   |||||||||||| |||||    
T  40287117 tttgaaaactatcctgaaacaactgtctacatgcagtaataatacaaccaagttc 40287171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 12555415 - 12555490
Alignment:
Q  67 agcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaa 142  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||||  |||||   ||  |||||||||||||||    
T  12555415 agcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaa 12555490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 51976871 - 51976608
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  51976871 acatcatcataaacgtgggagctagcatgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagt 51976772  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51976771 tctgaaaattacaatcaaacaactttctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 51976672  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  51976671 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtga 51976608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 36685016 - 36684753
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  36685016 acatcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagt 36684917  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36684916 tctgaaaattacaatcgaacaactgtctacaagcctgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaactt 36684817  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  36684816 gcaatccaaaacaaaatcaacattgtcataatgaagatcagtcacccattgtagtgccgtgtga 36684753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 8705823 - 8705561
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||||||||||||||||||||||    
T  8705823 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 8705724  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||    
T  8705723 tctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatactt 8705624  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtg 273  Q
    | ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||    
T  8705623 ggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtg 8705561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 9057710 - 9057448
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||||||||||||||||||||||    
T  9057710 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 9057611  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||    
T  9057610 tctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatactt 9057511  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtg 273  Q
    | ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||    
T  9057510 ggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtg 9057448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 45736577 - 45736356
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||| ||||||||||||||||||||||||||||    
T  45736577 acatcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagt 45736478  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||||||||| || |||||| ||| |||||||||||||| ||||||||||||| |||| ||| |||||||| ||| ||||||| ||||    
T  45736477 tctgaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaactt 45736378  T
Q  211 gcaatccaaaacaaaatcaaca 232  Q
    | ||||||||||||||||||||    
T  45736377 gaaatccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 4978417 - 4978668
Alignment:
Q  14 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||||||| | | |||||||||||||||| |||||| ||||||||||||||| ||||| |||||| ||| ||| |||| |||||||||||||||||||    
T  4978417 tcatcataaatgcgcgagttagcatgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttct 4978516  T
Q  114 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttc-aacaacagacttgc 212  Q
      ||| || || ||||||| || ||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||| |||| ||||||| | |||     
T  4978517 gaaaattataaccgaacaagtgcctacaagccagaataatacaacctagtttactattatcacctaggtttgaattaaaacgttcaaacaacatatttgg 4978616  T
Q  213 aatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag 264  Q
    ||||||||||||||| |||||||||| |||||||||||| |||| |||||||    
T  4978617 aatccaaaacaaaattaacattgtcagaatgaagatcagacatctattgtag 4978668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 49758956 - 49759100
Alignment:
Q  49 taccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctga 148  Q
    ||||||||  ||||||||||||| |||||| | |||||||||||||||| |||||| ||||||||  ||| ||||| | | |||| | ||||||| ||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctga 49759055  T
Q  149 ataatacaacctagttcactgctatcacctaggtttgaattaaaa 193  Q
    ||||| |||||||||||||| |||||  |||||||||||||||||    
T  49759056 ataatgcaacctagttcactactatcctctaggtttgaattaaaa 49759100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 26390800 - 26390956
Alignment:
Q  84 gcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtt 183  Q
    |||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||| || ||||| |||||||||||||| |||||  |||||||    
T  26390800 gcctcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtt 26390899  T
Q  184 tgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 240  Q
    | | |||||| | || ||||  | |||| |||||||| |||| || ||||| |||||    
T  26390900 tcagttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcata 26390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 38998988 - 38998864
Alignment:
Q  41 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 140  Q
    |||||||||||||| |||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  |||||||||||||    
T  38998988 gatggggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctac 38998889  T
Q  141 aagcctgaataatacaacctagttc 165  Q
    | |||  |||||||||||| |||||    
T  38998888 aggccgtaataatacaaccaagttc 38998864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 47165345 - 47165442
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 108  Q
    |||||| | |||||||||||| ||||||||||||||||| || |  |||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  47165345 acatcaccgtaaacgtgggagctagcatgagatggggctgcctttcctaattcacgagcgaccccattgacttgcctcctattgaactcgacgtgaga 47165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 37796716 - 37796562
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||| |  || | ||| || ||||||||||||||| |||||||  ||||||||| |||| | |||||||||||| ||||||||||||| ||    
T  37796716 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaatttgtgagcgacctcattagcttgcctcctattaaactcgacatgagtgt 37796617  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttc 165  Q
    | |  ||||||   |  |||||||||||||| |||  |||||||||||| |||||    
T  37796616 tttgaaaactatcctgaaacaactgtctacaggccgtaataatacaaccaagttc 37796562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 32073607 - 32073664
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  32073607 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 26390564 - 26390631
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccatt 78  Q
    |||| |||||||||||| |||||||||||||| ||| ||||    |||||||||||||||| ||||||    
T  26390564 acattatcataaacgtgagagttagcatgagacgggactacatgtgctaattcatgagcgatcccatt 26390631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 20916465 - 20916409
Alignment:
Q  66 gagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactac 122  Q
    |||||||| |||| | |||||||||||||||||| |||| ||||||||  |||||||    
T  20916465 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20916409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 20925427 - 20925371
Alignment:
Q  66 gagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactac 122  Q
    |||||||| |||| | |||||||||||||||||| |||| ||||||||  |||||||    
T  20925427 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20925371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 18481344 - 18481081
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||  || ||||||||||||||||||||||||||    
T  18481344 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagt 18481245  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481244 tctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 18481145  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  18481144 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtga 18481081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 26440917 - 26440784
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||| |||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||    
T  26440917 acattatcataatcgtgagagctagcattagatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagt 26440818  T
Q  111 tctagaaactacaatcgaacaactgtctacaagc 144  Q
    |||| ||||||   || |||||||||||||||||    
T  26440817 tctaaaaactattgtcaaacaactgtctacaagc 26440784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 32536156 - 32536357
Alignment:
Q  41 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 140  Q
    |||||||||||||||||||||||| |||||||||||||   |||  | | |||||||||||||| |||||||   ||| ||||| | | ||| ||| |||    
T  32536156 gatggggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaattacaagcaatcaattgtttac 32536255  T
Q  141 aagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 240  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||| |||  | || |||| | ||||| |||||||| ||||||| ||||  |||||    
T  32536256 aagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcata 32536355  T
Q  241 at 242  Q
    ||    
T  32536356 at 32536357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 7251217 - 7251115
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||| | ||| || |||||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  7251217 acattatcataatcatggaagctagcatgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagt 7251118  T
Q  111 tct 113  Q
    |||    
T  7251117 tct 7251115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 11911395 - 11911464
Alignment:
Q  42 atggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||| ||| |||||| || || | ||||||||| |||| |||||||||||||||||||||||||||    
T  11911395 atggggcttcccgagctaactcgtgggggaccccattcgtttacctcctattgaactcgacatgagagtt 11911464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 43989258 - 43989520
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||    
T  43989258 acatcatcataaacgtgggagctagcatgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgt 43989357  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  43989358 tctaaaaa-tacaatcgaacaattgtctgcaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaactt 43989456  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  43989457 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtga 43989520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 19315890 - 19316132
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||| |||||||| || ||| || ||||||||||   |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  19315890 acataatcataagcgtgggagctaccataaggtggggctacctgtgctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagt 19315989  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  |||||   | | ||||||| ||||||||| || ||||| |||||||| ||||| |||||| |||  ||||| ||||| || || |||||   |||    
T  19315990 tctgaaaactgttaacaaacaactatctacaagcatgtataatgcaacctagctcactactatcatctacatttgacttaaagtgatctacaac-ttctt 19316088  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagcca 254  Q
    ||| | || | ||||||||||||| ||||| | |||||| ||||    
T  19316089 gcagtgcagagcaaaatcaacattatcatactaaagatccgcca 19316132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 43813171 - 43813267
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgag 107  Q
    ||||||||| ||||| | ||| ||| ||||||||||||||||||| ||||||||||| |||||||||||  ||| || |||||||||||||||||||    
T  43813171 acatcatcaaaaacgagagagctagtatgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacatgag 43813267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 1394232 - 1394134
Alignment:
Q  16 atcataaacgtgggagttagcatgagatgggg-ctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||| | ||||||| |||||| |||||||| ||||    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  1394232 atcatagatgtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttct 1394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 17283581 - 17283623
Alignment:
Q  71 accccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  17283581 accccattcgtttgcctcctattgaactcgacataagagttct 17283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 13200906 - 13200849
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    ||||||| |||||||| ||| |||| | |||||||||| |||||||||||||||||||    
T  13200906 tagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtt 13200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 47783057 - 47783000
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  47783057 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 9633111 - 9633067
Alignment:
Q  69 cgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    ||||||||||   ||||||||||||||||||||||||||||||||    
T  9633111 cgaccccattcacttgcctcctattgaactcgacatgagagttct 9633067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 35096975 - 35096917
Alignment:
Q  55 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||| || ||||| |||| ||| | |||||| |||||||||||||||||||||||||    
T  35096975 agctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttct 35096917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 1479285 - 1479333
Alignment:
Q  65 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||| |||||||||   |||||||||||||||||||| |||||||||||    
T  1479285 tgagtgaccccatttacttgcctcctattgaactcgatatgagagttct 1479333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 942804 - 942541
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||||| |||||||||||| ||||||||||||||| |  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  942804 acatcatcgtaaacgtgggagatagcatgagatggggttgtcctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagt 942705  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  942704 tctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagactt 942605  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  942604 ggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtga 942541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 4513183 - 4513081
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  4513183 acattatcataaacatgggagctagtatgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagt 4513084  T
Q  111 tct 113  Q
    |||    
T  4513083 tct 4513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 19047169 - 19047098
Alignment:
Q  40 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||| |||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||||||||    
T  19047169 agatagggctaccctcgctaattcgtgagcgaccacattagcttgcctcctattaaactcgacatgagagtt 19047098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 13757503 - 13757601
Alignment:
Q  13 atcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||  | |||| ||| || | |||| |||| |||||||||||| ||||||||| |||| |||||| || |||| ||||| |||||||||||    
T  13757503 atcatcataaaaattggagctaggattatatggagctatcctagctaattcgtgagcgacctcattagtttgcttcttattaaactcaacatgagagtt 13757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 15950866 - 15950809
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  15950866 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 23820634 - 23820382
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||| ||||||| |||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  23820634 acatcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagt 23820535  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||  ||| ||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||    
T  23820534 tctgaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagactt 23820435  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgta 263  Q
    | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  23820434 ggaatccaaaacaaaattaacatggtcataatgaagatcagccacccattgta 23820382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 24808771 - 24809014
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||    |||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||| |        ||    
T  24808771 acatcatcataaacgtggc---tagcatgagatggggctatcctagctaattcatgagtggccccattggcttgcctcctattgaactag--------gt 24808859  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |         |||| | |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  24808860 t---------acaaccaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagactt 24808950  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag-tgccgtgtg 273  Q
    | |||| |||||||||||||||| |||||| |||||||  | || ||||||||| |||||||||    
T  24808951 ggaatctaaaacaaaatcaacatggtcatagtgaagatttgacacccattgtagctgccgtgtg 24809014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 21118505 - 21118373
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||| ||||||||||| |||| |||||  |||||| ||||||||||||||  |||||| |||| |||| | |||||||||||||||||||||||||||||    
T  21118505 acattatcataaacgttggagctagcaatagatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagt 21118407  T
Q  111 tctagaaactacaatcgaacaactgtctacaagc 144  Q
    |||  ||||||   || |||||||||||||||||    
T  21118406 tctgaaaactattgtcaaacaactgtctacaagc 21118373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 40901803 - 40901907
Alignment:
Q  9 ggacatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 108  Q
    ||||||||||||| |  |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  40901803 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 40901902  T
Q  109 gttct 113  Q
    |||||    
T  40901903 gttct 40901907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 10325110 - 10325166
Alignment:
Q  55 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  10325110 agctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 12980787 - 12980739
Alignment:
Q  65 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  12980787 tgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttct 12980739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 20492547 - 20492488
Alignment:
Q  55 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttcta 114  Q
    ||||||||| |||||||||| ||| | |||||||||||| ||||||| ||||||||||||    
T  20492547 agctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttcta 20492488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 29526894 - 29526837
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  29526894 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 8321192 - 8321246
Alignment:
Q  57 ctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    ||||||||||||||||||| || ||||| ||| |||| || ||||||||||||||    
T  8321192 ctaattcatgagcgaccccgtttgtttgtctcgtattaaattcgacatgagagtt 8321246  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 21588151 - 21588208
Alignment:
Q  54 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    ||||||||||||| || ||| |||| | |||||||||| | |||||||||||||||||    
T  21588151 tagctaattcatgtgcaacctcatttgattgcctcctaataaactcgacatgagagtt 21588208  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 42029863 - 42029943
Alignment:
Q  59 aattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 139  Q
    |||||| |||||||||||||  |||||||| |||| || || ||||||||||| | |||||||  || ||||| |||||||    
T  42029863 aattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtcta 42029943  T

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Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 41197356 - 41197552
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  41197356 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagt 41197455  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 207  Q
    |||  ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41197456 tctgaaaattacaatcgaacaactgtctataagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 41197552  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 36779403 - 36779663
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    ||||||||||| ||||||||| || ||| ||||||| |||||||||||||| |||||| ||| | ||||| ||||||||||||| |||||||||||||||    
T  36779403 acatcatcatagacgtgggagctaacat-agatgggactaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagt 36779501  T
Q  111 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 210  Q
    |||   || ||||| | |||||||| |||||||||| ||||||||||||||||||||| || |||  |||||||||||||||| ||||||||| ||||||    
T  36779502 tctg--aattacaaccaaacaactgcctacaagccttaataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagactt 36779599  T
Q  211 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtga 274  Q
    | ||||||||| ||||||||||| || ||| ||||||||| ||||||||||||| | |||||||    
T  36779600 ggaatccaaaataaaatcaacatggttatagtgaagatcaaccatccattgtagcgtcgtgtga 36779663  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 30376427 - 30376557
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  30376427 acatcatcataaacgttggagctagcatgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagt 30376526  T
Q  111 tctagaaactacaatcgaacaactgtctaca 141  Q
    | |  ||| || ||||||||||||| |||||    
T  30376527 tttgaaaattataatcgaacaactgcctaca 30376557  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 34905685 - 34905529
Alignment:
Q  12 catcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 111  Q
    ||||||| ||||| |||||||||||||||||| |||||||    |||||||||||||||||| |||||||||| |||||||||||||| |||  ||||||    
T  34905685 catcatcgtaaacttgggagttagcatgagatcgggctacttgggctaattcatgagcgacctcattggtttgtctcctattgaactcaacacaagagtt 34905586  T
Q  112 ctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcact 168  Q
    ||  ||||||  | | ||||||||||||||||| || |||| ||||||||| |||||    
T  34905585 ctgaaaactattaacaaacaactgtctacaagcatgtataacacaacctagctcact 34905529  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 12378608 - 12378660
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattc 63  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12378608 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 12378660  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 14856952 - 14857068
Alignment:
Q  41 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 140  Q
    ||||||| | || |||||||||||||||||| | |||| ||||||||| |||| ||||||||||||||||| |  || ||   || |||||||||||||     
T  14856952 gatggggatgccttagctaattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagttttgaaagctttcatggaacaactgtctag 14857051  T
Q  141 aagcctgaataatacaa 157  Q
    |||| | ||||||||||    
T  14857052 aagcattaataatacaa 14857068  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 12714847 - 12714949
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | ||||||||||    
T  12714847 acatcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagt 12714946  T
Q  111 tct 113  Q
    |||    
T  12714947 tct 12714949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 12776078 - 12776180
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 110  Q
    |||||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | ||||||||||    
T  12776078 acatcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagt 12776177  T
Q  111 tct 113  Q
    |||    
T  12776178 tct 12776180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 29985530 - 29985437
Alignment:
Q  20 taaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||| ||||||| || |||||  | ||||||||  |||||| || ||| ||||| |||| | ||| || |||||||||||||||||||||||||    
T  29985530 taaatgtgggagctaacatgacctagggctacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttct 29985437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 39714935 - 39714874
Alignment:
Q  11 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgac 72  Q
    ||||||||||||||||| ||| ||  || || ||||||||| ||| ||||||||||||||||    
T  39714935 acatcatcataaacgtgagagctaatataaggtggggctacactaactaattcatgagcgac 39714874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 34578 - 34530
Alignment:
Q  65 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 113  Q
    |||||||||  ||||| |||| ||||||| |||||||||||||||||||    
T  34578 tgagcgaccatattggcttgcttcctattaaactcgacatgagagttct 34530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 48215 - 48111
Alignment:
Q  9 ggacatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 108  Q
    ||||||||||||| |  |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  48215 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 48116  T
Q  109 gttct 113  Q
    |||||    
T  48115 gttct 48111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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