View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_162 (Length: 271)

Name: NF11309A_low_162
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_162
NF11309A_low_162
[»] chr5 (2 HSPs)
chr5 (23-191)||(41222154-41222322)
chr5 (189-259)||(41222675-41222747)
[»] chr8 (1 HSPs)
chr8 (44-173)||(13375861-13375997)
[»] chr6 (3 HSPs)
chr6 (44-173)||(16985223-16985359)
chr6 (119-156)||(16795006-16795043)
chr6 (44-104)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (44-110)||(38942998-38943064)
chr3 (44-155)||(7055522-7055640)
chr3 (44-110)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (44-84)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 41222154 - 41222322
Alignment:
Q  23 ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgctagcttt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  41222154 ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttcgaaagataaggtcgctagattt 41222253  T
Q  123 cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222254 cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 41222322  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 41222675 - 41222747
Alignment:
Q  189 caattaatgtaatgtaaatttattgtgacacg--atatatatcttaaatatatggtcactttataaaaatatt 259  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||||||    
T  41222675 caattaatgtaatgtaaatttattgtaacacgatatatatatcttaaatatatggtcacttcataaaaatatt 41222747  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 13375997 - 13375861
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgcta-------gctttcagcaactccgaaa 136  Q
    |||| ||||||| ||||||||||||| ||||||||  |||| | ||||||| |||||| ||| ||||||| |||       |||||||||||||||||||    
T  13375997 tgccagactggttgggtgccatgactactcttcaaagattaaaaatcagtgggtttccgaagttaaggtcactaccagacagctttcagcaactccgaaa 13375898  T
Q  137 catgcaaaagttaagtattgttaatttctctatgttg 173  Q
    | |||||| |||||||||||||| || ||||||||||    
T  13375897 cttgcaaaggttaagtattgttagttgctctatgttg 13375861  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 16985359 - 16985223
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaaa 136  Q
    |||| ||||| | |||||||||||||||||||||||||||| | |||| ||| ||||||||| |||| || ||       ||||||||||||||||||||    
T  16985359 tgccagactgtttgggtgccatgacttctcttcaagaattatacatcattgactttccaaagttaagttcactaccagacagctttcagcaactccgaaa 16985260  T
Q  137 catgcaaaagttaagtattgttaatttctctatgttg 173  Q
      |||||||||||| |||| || ||| | ||||||||    
T  16985259 tttgcaaaagttaattattattgattgccctatgttg 16985223  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 16795043 - 16795006
Alignment:
Q  119 ctttcagcaactccgaaacatgcaaaagttaagtattg 156  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  16795043 ctttcagcaactccgaaacttgcaagagttaagtattg 16795006  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 16779091 - 16779031
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaa 104  Q
    |||| ||||| | ||||||||||||||||||||||| |||| | |||  ||||||||||||    
T  16779091 tgccagactgtttgggtgccatgacttctcttcaagtattagacatctatgagtttccaaa 16779031  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 38943064 - 38942998
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag 110  Q
    |||||||||||| ||||||||||||||||||||||  |||||| ||||||| |||||| ||| ||||    
T  38943064 tgccggactggttgggtgccatgacttctcttcaaagattacaaatcagtgggtttccgaagttaag 38942998  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 7055522 - 7055640
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaaa 136  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||  |  |||||| | | ||||||||||       ||| |||||||||||| |||    
T  7055522 tgccggactggttgggtgccatgacttctcttcaagtattacaaatctctaggtttccgatgttaaggtcgctaccagacagcattcagcaactccaaaa 7055621  T
Q  137 catgcaaaagttaagtatt 155  Q
    | | |||||||||||||||    
T  7055622 cttacaaaagttaagtatt 7055640  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 38941597 - 38941663
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag 110  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||  | ||||||||||| ||||    
T  38941597 tgccagactggttgggtgccatgacttctcttcaagtattacacatccttaagtttccaaagttaag 38941663  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 6415 - 6375
Alignment:
Q  44 tgccggactggtagggtgccatgacttctcttcaagaatta 84  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  6415 tgccggactggttgggtgccatgacttctcttcaagtatta 6375  T

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