View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_163 (Length: 271)
Name: NF11309A_low_163
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_163 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 49166116 - 49165864
Alignment:
| Q |
19 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
118 |
Q |
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| T |
49166116 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
49166017 |
T |
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| Q |
119 |
actttgttgctggttaggatggataatacatcaattgtaaaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
218 |
Q |
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| T |
49166016 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
49165917 |
T |
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| Q |
219 |
gctcgagaatgaatttcgtacacgctgcgcacattagtgtttcttttacagtt |
271 |
Q |
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| T |
49165916 |
gctcgagaatgaatttcgtacacgctgcgcaaattagtgtttcttttacagtt |
49165864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 43752543 - 43752422
Alignment:
| Q |
20 |
catcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcacccaa |
119 |
Q |
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|||||| ||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||| |
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| T |
43752543 |
catcaaacacaagatcttccttattgacgagctcaaaaacacatacatctccagcctccaatttattttcctctacaaacttactccaacctgtactcaa |
43752444 |
T |
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| Q |
120 |
ctttgttgctggttaggatgga |
141 |
Q |
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||| |||| |||| ||||||| |
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| T |
43752443 |
cttggttgacggttcggatgga |
43752422 |
T |
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