View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_170 (Length: 266)
Name: NF11309A_low_170
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_170 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 38145465 - 38145217
Alignment:
| Q |
12 |
atgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaatta |
111 |
Q |
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| T |
38145465 |
atgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaatta |
38145366 |
T |
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| Q |
112 |
cggctgcttggacatggggatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaag |
211 |
Q |
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| T |
38145365 |
cggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaag |
38145266 |
T |
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| Q |
212 |
gatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaat |
260 |
Q |
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| T |
38145265 |
gatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaat |
38145217 |
T |
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Back To:
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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 11787355 - 11787533
Alignment:
| Q |
12 |
atgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaatta |
111 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| | | |
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| T |
11787355 |
atgaaaggcgtttcgatttcggaaacatatgagagtccttcataatcatggccaccacttcttactcttagatgaataccaagtttctttgaacaagtaa |
11787454 |
T |
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| Q |
112 |
cggctgcttggacatggggatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacaccttag |
190 |
Q |
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| T |
11787455 |
cagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttttggagcagaaggtaccaaataccttag |
11787533 |
T |
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