View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_171 (Length: 265)
Name: NF11309A_low_171
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_171 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 14759655 - 14759399
Alignment:
| Q |
9 |
atcagagactaaatataatcctgcagtagttaaaggaggacgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagct |
108 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14759655 |
atcagacactaaatataatccagcagtagttaaaggaggacgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacattagct |
14759556 |
T |
|
| Q |
109 |
tttgctttcttaactaaattcaatgcataagccaacggattttcaattagttttcctgcagttgtaaccgcaacgggaagtgctatagcattaccatagt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
14759555 |
tttgctttcttaactaaattcaatgcatactccagtggattttcaataagttttcctgcagttgtaaccgcaacgggaaacgctatagcgttaccataat |
14759456 |
T |
|
| Q |
209 |
aaccttttggaagttgtttgtaaacagatttgttacgtgcatcgactaggcagatca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14759455 |
aaccttttggaagttgtttgtaaacagatttgttacgtgcatcgactaggcagatca |
14759399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 14878085 - 14878339
Alignment:
| Q |
9 |
atcagagactaaatataatcctgcagtagttaaaggaggacgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagct |
108 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14878085 |
atcagacactagatacaatcctgcagtagttaaaggaggacgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagct |
14878184 |
T |
|
| Q |
109 |
tttgctttcttaactaaattcaatgcataagccaacggattttcaattagttttcctgcagttgtaaccgcaacgggaagtgctatagcattaccatagt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
14878185 |
tttgctttcttaactaaattcaatgcataagccaacggattttcaattagttttcctgcagttgtaaccgcaacgggaaatactatagcgttaccatagt |
14878284 |
T |
|
| Q |
209 |
aaccttttggaagttgtttgtaaacagatttgttacgtgcatcgactaggcagat |
263 |
Q |
| |
|
|||| | ||||||||||| || |||||||||| ||||||||||| ||| |||||| |
|
|
| T |
14878285 |
aaccatatggaagttgttggtcaacagatttgctacgtgcatcggctatgcagat |
14878339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 215
Target Start/End: Original strand, 14786265 - 14786436
Alignment:
| Q |
44 |
gaggacgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagcttttgctttcttaactaaattcaatgcataagccaa |
143 |
Q |
| |
|
|||| ||||||||||||||||||||||| || | |||||||| ||||||| | ||||| |||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
14786265 |
gaggtcgacccttgataaccattaaatccgcaatcgaatgcatgtactcttgggtgacattagcttttgctttcttaactaaattcaacgcgtacgccaa |
14786364 |
T |
|
| Q |
144 |
cggattttcaattagttttcctgcagttgtaaccgcaacgggaagtgctatagcattaccatagtaaccttt |
215 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||| | | | | ||||| ||| ||||||||||||||||| |
|
|
| T |
14786365 |
tggattttcaataagttttcccgcggttgttaccatagctgaatttgctaaagcgttaccatagtaaccttt |
14786436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 14767187 - 14767356
Alignment:
| Q |
49 |
cgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagcttttgctttcttaactaaattcaatgcataagccaacggat |
148 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||| | ||| || ||| ||||| |||||||| | | |||||| | || |||| |
|
|
| T |
14767187 |
cgacccttgataaccattaaatctgcaactgaatgcatgtattcttgagttacatcagatttagcttttttaactaactctagtgcataccctaatggat |
14767286 |
T |
|
| Q |
149 |
tttcaattagttttcctgcagttgtaaccgcaacgggaagtgctatagcattaccatagtaaccttttgg |
218 |
Q |
| |
|
|||| |||||||| || || ||||||||||| || |||| ||| | ||||||||| |||||||| ||||| |
|
|
| T |
14767287 |
tttccattagtttccccgcggttgtaaccgcgacaggaaatgcaaaagcattaccgtagtaaccgtttgg |
14767356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 263
Target Start/End: Original strand, 84170 - 84399
Alignment:
| Q |
34 |
gtagttaaaggaggacgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagcttttgctttcttaactaaattcaatg |
133 |
Q |
| |
|
||||| ||| |||| | ||||||||| |||| ||||||||||| |||||||| ||||||| | ||||| |||||||||||||||||||||||| || || |
|
|
| T |
84170 |
gtagtaaaatgaggtctacccttgattaccaataaatctgccatggaatgcatgtactcttcggtgacattagcttttgctttcttaactaaatccagtg |
84269 |
T |
|
| Q |
134 |
cataagccaacggattttcaattagttttcctgcagttgtaaccgcaacgggaagtgctatagcattaccatagtaaccttttggaagttgtttgtaaac |
233 |
Q |
| |
|
|||| | ||| || |||||||||||||||||| ||||||||| ||| ||||||| |||||||| |||||||||||||| ||||| | || || ||| |
|
|
| T |
84270 |
catacgtcaatgggttttcaattagttttcctacagttgtaattgcagcgggaagcgctatagcgttaccatagtaaccatttggtacaagtaggttaac |
84369 |
T |
|
| Q |
234 |
agatttgttacgtgcatcgactaggcagat |
263 |
Q |
| |
|
| ||||| ||||||||||||| | |||||| |
|
|
| T |
84370 |
aaatttgctacgtgcatcgacgatgcagat |
84399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 11999777 - 11999903
Alignment:
| Q |
49 |
cgacccttgataaccattaaatctgccactgaatgcatatactctttgttgacactagcttttgctttcttaactaaattcaatgcataagccaacggat |
148 |
Q |
| |
|
|||||||| |||||||||||||||| | ||| |||||||||||||| | ||| ||| |||| ||||||||||||||| || ||||| |||||||||| |
|
|
| T |
11999777 |
cgaccctttataaccattaaatctgtcgttgattgcatatactctttagtaacattagttttttctttcttaactaaatctaaagcatatgccaacggat |
11999876 |
T |
|
| Q |
149 |
tttcaattagttttcctgcagttgtaa |
175 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
11999877 |
tttcaattagttttcctgcggttgtaa |
11999903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University