View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_18 (Length: 458)
Name: NF11309A_low_18
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 34333768 - 34333470
Alignment:
| Q |
15 |
aatcggaaaaaataaaagattttgtcacggcatgtttgcttccagatctttctccaaaagatgggcaaccaattaatctaatcactcgtgagatgtcgtt |
114 |
Q |
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| T |
34333768 |
aatcggaaaaaataaaagattttgtcacggcatgtttgcttccagatctttctccaaaagatgggcaaccaattaatctaatcactcgtgagatgtcgtt |
34333669 |
T |
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| Q |
115 |
atcttcatgcttccttcagactatgactattcttttcgattatctagctagtagtttgatattttatttacatgccnnnnnnnnnnaagcaacatgcctt |
214 |
Q |
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| T |
34333668 |
atcttcatgcttccttcagactatgactattcttttcgattatctagctagtagtttgatattttatttacatgccttttttttttaagcaacatgcctt |
34333569 |
T |
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| Q |
215 |
gttaaattgagtattgaattaatatgttagtagttagaatgaataagtcacgagtgattattggccaaaagcatttctttgaaagagtaattattttaa |
313 |
Q |
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| T |
34333568 |
gttaaattgagtattgaattaatatgttagtagttagaatgaataagtcacgagtgattattggccaaaagcatttctttgaaagagtaattattttaa |
34333470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 34333283 - 34333251
Alignment:
| Q |
305 |
ttattttaaccagtggtaagagtttaatatgat |
337 |
Q |
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| T |
34333283 |
ttattttaaccagtggtaagagtttaatatgat |
34333251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 12219554 - 12219649
Alignment:
| Q |
363 |
agactaaaattaagagaataattttgatataaggtcaatgtaaaacttttcagattgcaattcagttatatataaactatcaatttgtatgactat |
458 |
Q |
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| T |
12219554 |
agactaaaattaagagaataattttgatataaggtcaatgtaaaacttttcagattgcaattcagttatatataaactatcaatttgtatgactat |
12219649 |
T |
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