View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_180 (Length: 261)
Name: NF11309A_low_180
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_180 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 24130246 - 24130130
Alignment:
| Q |
131 |
taagttacgaaagtaaggtgatgccgtaaaatgacacactttcattgaattta-gtgtaaagttgatttacaatgacagtatttgtccttgaaatctaat |
229 |
Q |
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| T |
24130246 |
taagttacaaaagtaaggcgatgccgtaaaacgacacactttcattggatttaagtgtaaagttgatttacaatgacagtatttgtccttgaaatctaat |
24130147 |
T |
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| Q |
230 |
ttttatttctttgatat |
246 |
Q |
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| T |
24130146 |
ttttatttctttgatat |
24130130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 24130978 - 24130882
Alignment:
| Q |
38 |
ttgtgttgtttttcgcttgacccatgaactccccaacatgtatctaatgtccatgcacttagtatttcagttgtacttacgggaccttgcttataag |
134 |
Q |
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| T |
24130978 |
ttgtgttgtttgtcgcttgacccatgaactccccaacatgtatctaatgtccatgcacttagtatttcagttgtacttacgggaccttgtttataag |
24130882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 24148218 - 24148186
Alignment:
| Q |
217 |
cttgaaatctaatttttatttctttgatatttt |
249 |
Q |
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| T |
24148218 |
cttgaaatccaatttttatttctttgatatttt |
24148186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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