View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_184 (Length: 259)

Name: NF11309A_low_184
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_184
NF11309A_low_184
[»] chr5 (13 HSPs)
chr5 (12-133)||(38180888-38181009)
chr5 (12-133)||(38190122-38190243)
chr5 (12-133)||(38208112-38208233)
chr5 (12-133)||(38217347-38217468)
chr5 (12-133)||(38456248-38456369)
chr5 (12-109)||(26033227-26033324)
chr5 (12-108)||(38447447-38447543)
chr5 (190-237)||(38180761-38180808)
chr5 (190-237)||(38190323-38190370)
chr5 (190-237)||(38207985-38208032)
chr5 (190-237)||(38217548-38217595)
chr5 (190-237)||(38456121-38456168)
chr5 (190-237)||(26033448-26033495)
[»] chr4 (2 HSPs)
chr4 (37-99)||(53351367-53351429)
chr4 (191-226)||(53351852-53351887)
[»] chr1 (2 HSPs)
chr1 (12-99)||(38342739-38342826)
chr1 (12-99)||(38446932-38447019)
[»] chr6 (1 HSPs)
chr6 (11-90)||(4121643-4121722)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 38181009 - 38180888
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181009 tgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 38180910  T
Q  112 acaaattaatgacatgatcaac 133  Q
    ||||||||||||||||||||||    
T  38180909 acaaattaatgacatgatcaac 38180888  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 38190122 - 38190243
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190122 tgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 38190221  T
Q  112 acaaattaatgacatgatcaac 133  Q
    ||||||||||||||||||||||    
T  38190222 acaaattaatgacatgatcaac 38190243  T

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Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 38208233 - 38208112
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38208233 tgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 38208134  T
Q  112 acaaattaatgacatgatcaac 133  Q
    ||||||||||||||||||||||    
T  38208133 acaaattaatgacatgatcaac 38208112  T

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Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 38217347 - 38217468
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217347 tgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 38217446  T
Q  112 acaaattaatgacatgatcaac 133  Q
    ||||||||||||||||||||||    
T  38217447 acaaattaatgacatgatcaac 38217468  T

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Target: chr5; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 38456369 - 38456248
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456369 tgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaat 38456270  T
Q  112 acaaattaatgacatgatcaac 133  Q
    ||||||||||||||||||||||    
T  38456269 acaaattaatgacatgatcaac 38456248  T

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Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 26033227 - 26033324
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactga 109  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26033227 tgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtcattatcgcttcttcccggtaactga 26033324  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 38447543 - 38447447
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg 108  Q
    ||||||| ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  38447543 tgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg 38447447  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 38180808 - 38180761
Alignment:
Q  190 tacctcatgagccagcttagaccatttgaattcaccatactttatata 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180808 tacctcatgagccagcttagaccatttgaattcaccatactttatata 38180761  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 38190323 - 38190370
Alignment:
Q  190 tacctcatgagccagcttagaccatttgaattcaccatactttatata 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190323 tacctcatgagccagcttagaccatttgaattcaccatactttatata 38190370  T

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Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 38208032 - 38207985
Alignment:
Q  190 tacctcatgagccagcttagaccatttgaattcaccatactttatata 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38208032 tacctcatgagccagcttagaccatttgaattcaccatactttatata 38207985  T

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Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 38217548 - 38217595
Alignment:
Q  190 tacctcatgagccagcttagaccatttgaattcaccatactttatata 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217548 tacctcatgagccagcttagaccatttgaattcaccatactttatata 38217595  T

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Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 38456168 - 38456121
Alignment:
Q  190 tacctcatgagccagcttagaccatttgaattcaccatactttatata 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456168 tacctcatgagccagcttagaccatttgaattcaccatactttatata 38456121  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 26033448 - 26033495
Alignment:
Q  190 tacctcatgagccagcttagaccatttgaattcaccatactttatata 237  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||    
T  26033448 tacctcctcagccagcttagaccatttgaattcaccatactttttata 26033495  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 53351367 - 53351429
Alignment:
Q  37 acgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc 99  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  53351367 acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttcc 53351429  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 53351852 - 53351887
Alignment:
Q  191 acctcatgagccagcttagaccatttgaattcacca 226  Q
    ||||| ||||||||||||||||||||||||||||||    
T  53351852 acctcttgagccagcttagaccatttgaattcacca 53351887  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 38342826 - 38342739
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc 99  Q
    ||||||| |||||||||||||||| | |  ||| | ||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  38342826 tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc 38342739  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 38447019 - 38446932
Alignment:
Q  12 tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc 99  Q
    ||||||| |||||||||||||||| | |  ||| | ||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  38447019 tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc 38446932  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 4121722 - 4121643
Alignment:
Q  11 gtgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc 90  Q
    |||||||  ||| ||||||| | ||||| ||||| |  |||||||||||| ||||||||||||||||||||  |||||||    
T  4121722 gtgttgttagggtagggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatc 4121643  T

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