View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_185 (Length: 259)
Name: NF11309A_low_185
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_185 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 38243750 - 38244002
Alignment:
| Q |
1 |
aatattcaactatacaaacatcattcatcatcaatttcttcttctatnnnnnnnnngtaacaaacaataaatgaaattaaagaagagaaatgagtttgat |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243750 |
aatattcaactataaaaacatcattcatcatcaatttcttcttctataaaaaaaaagtaacaaacaataaatgaaattaaagaagagaaatgagtttgat |
38243849 |
T |
|
| Q |
101 |
gataggaactgacgggtttttgatagaaatggaacaaggaaggaccaaggaactgtttacgcttggcgaaaacttcatcggcggatggtccataatacgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38243850 |
gataggaactgacgggtttttgatagaaatggaacaaggaaggaccaaggaactgtttacgcttggagaaaacttcatcggcggatggtccataatacgg |
38243949 |
T |
|
| Q |
201 |
atgaggttggtgatcgaaaggcggtatctgcggcggtggcgtagtaatggttt |
253 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38243950 |
atgaggttggtgatcgaacggcggtatctgcggcggtggcgtagtaatggttt |
38244002 |
T |
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