View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_188 (Length: 257)
Name: NF11309A_low_188
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_188 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 24546233 - 24546483
Alignment:
| Q |
1 |
ggggtaaaaggagcaattacatgggtgcagaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaa |
100 |
Q |
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| T |
24546233 |
ggggtaaaaggagcaagtacatgggtgcagaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaa |
24546332 |
T |
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| Q |
101 |
agataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgca |
200 |
Q |
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| T |
24546333 |
agataccagttgcttttccaaatcaaacccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgca |
24546432 |
T |
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| Q |
201 |
aagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaaa |
251 |
Q |
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| T |
24546433 |
aagcaaaaaataccatcttgtaccggaatgaagatttgggtgggcgttaaa |
24546483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 24538936 - 24539105
Alignment:
| Q |
78 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgt |
177 |
Q |
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| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattctt |
24539035 |
T |
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| Q |
178 |
tactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaa |
250 |
Q |
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| T |
24539036 |
catt---agtgtcgaagactgcgaagcagaaattatcatcttgtaccggaatgaacatttgagcgggcgttaa |
24539105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 632 - 394
Alignment:
| Q |
4 |
gtaaaaggagcaattacatgggtgcagaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaaga |
103 |
Q |
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| T |
632 |
gtaaaaggaacaagtacatgggtgaagaaagaaaattggggagcacccta---------ggtgcatcttgtaagttggtgcaatctgtggccttgaaaga |
542 |
T |
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| Q |
104 |
taccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaag |
203 |
Q |
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| T |
541 |
aaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttccataagtgccatattcgttactaaaagagctggtgaatgcaaag |
442 |
T |
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| Q |
204 |
cagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaaa |
251 |
Q |
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| T |
441 |
cagaaaataccatattgtaccggaatgaagatttgagttggcgttaaa |
394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
| Q |
78 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt |
142 |
Q |
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| T |
1667880 |
ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt |
1667944 |
T |
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