View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_189 (Length: 257)
Name: NF11309A_low_189
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_189 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 2906168 - 2906417
Alignment:
| Q |
2 |
atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccacca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
2906168 |
atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgcca |
2906267 |
T |
|
| Q |
102 |
ccaataggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2906268 |
ccaacaggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac |
2906367 |
T |
|
| Q |
202 |
cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2906368 |
cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
2906417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 2854140 - 2854389
Alignment:
| Q |
2 |
atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccacca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||| ||||||||||| |
|
|
| T |
2854140 |
atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccacca |
2854239 |
T |
|
| Q |
102 |
ccaataggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854240 |
ccaacaggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac |
2854339 |
T |
|
| Q |
202 |
cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854340 |
cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
2854389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University