View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_194 (Length: 254)
Name: NF11309A_low_194
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_194 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 35 - 248
Target Start/End: Original strand, 53042565 - 53042768
Alignment:
| Q |
35 |
ttgttgttgtgtgtatatgataaaatcaaaccccaaacaaatacattgctaactcaatgtagctagcaacttactaaataggaaatgtgttgttacagct |
134 |
Q |
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| T |
53042565 |
ttgttgttgtgtgtatataataaaatcaaaccccaaacaaatacattgctaactcaatgtagctagcaacttactaaataggaaatgtgttgttacagct |
53042664 |
T |
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| Q |
135 |
gaaagacaacggatgacaacgataatgtctatatttggaaataggttttgttttcaatgcagtttcagatcgatggaaaattgtttgaaatcgttaaacg |
234 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042665 |
gaaa----------gacaacgataatgtctgtatttggaaataggttttgttttcaatgcagtttcagatcgatggaaaattgtttgaaatcgttaaacg |
53042754 |
T |
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| Q |
235 |
gaaaaaacagcacc |
248 |
Q |
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|||||||||||||| |
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| T |
53042755 |
gaaaaaacagcacc |
53042768 |
T |
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