View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_196 (Length: 252)
Name: NF11309A_low_196
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_196 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 50764810 - 50764573
Alignment:
| Q |
9 |
accatagagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaggaaacatttgacaataagctaagaatgac |
108 |
Q |
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| T |
50764810 |
accacagagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgac |
50764711 |
T |
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| Q |
109 |
caaagaaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatgga |
208 |
Q |
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| T |
50764710 |
caaagaaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatgga |
50764611 |
T |
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| Q |
209 |
tctcattctgaatttgtctaacatttgactatgaacct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
50764610 |
tctcattctgaatttgtctaacatttgactatgaacct |
50764573 |
T |
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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 35153576 - 35153489
Alignment:
| Q |
157 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatga |
242 |
Q |
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| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatga |
35153489 |
T |
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