View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_2 (Length: 817)
Name: NF11309A_low_2
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 422 - 817
Target Start/End: Complemental strand, 10922529 - 10922129
Alignment:
| Q |
422 |
gagtctaattgctagaggagttatacatttatcgaacatgaagtcgtgaattttgatgcaatgcactatggtcattaaataaaccagtcacacgacgcta |
521 |
Q |
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| T |
10922529 |
gagtctaattgctagaggagttatacatttatctaacatgaagtcgtgaattttgatgcaatgcactatggtcattaaataaaccagtcacacgacgcta |
10922430 |
T |
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| Q |
522 |
gacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatactttaaagttgttaagctgttaatcatattgctgca |
621 |
Q |
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| T |
10922429 |
gacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatactttaaagttgttaagccgttaatcatattgctgca |
10922330 |
T |
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| Q |
622 |
actgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaatcgactatagttgttaaac |
721 |
Q |
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| T |
10922329 |
actgattttgtatatatactcgtaccttgtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactatagttgttaaac |
10922230 |
T |
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| Q |
722 |
caattgaatctgtggttagacttgattttcacaa-----caataaatacgatatgtatctacaaattttgcctccaataggcggtgaggttgaattttga |
816 |
Q |
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| T |
10922229 |
caattgaatctgtggttcgacttgattttcacaacactgcaataaatacgatatgtatctacaaattttgcctccaataggcggtgaggttgaagtttga |
10922130 |
T |
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| Q |
817 |
t |
817 |
Q |
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| T |
10922129 |
t |
10922129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 10922706 - 10922533
Alignment:
| Q |
132 |
ataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgatttaacgaggnnnnnnntgccgg |
231 |
Q |
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| T |
10922706 |
ataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgatttaacgagg-aaaaaatgcccg |
10922608 |
T |
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| Q |
232 |
catatctcaatctatggttttgtttgaatccttgtaaagcttttcttgcacgccagcatacgtatactttgataa |
306 |
Q |
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| T |
10922607 |
catatctcaatctatagttttgtttgaatccttgtaaagcttttcttgcacgccggcatacgaatactttgataa |
10922533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 10935295 - 10935174
Alignment:
| Q |
15 |
tatcattagagagaaagttggaatagctcccattgtagaaaatatgctagtgttttgttt-aggtgatttagacatgaaggaaatatttgtagaagcata |
113 |
Q |
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| T |
10935295 |
tatcattaaagagaaagttggaatagctcccattgtagaaaagatgctagtgttttgttttaggtgatttagacatgaaggaaatatttgtagaagcata |
10935196 |
T |
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| Q |
114 |
tgtaatctttaaaatgttataa |
135 |
Q |
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| T |
10935195 |
tgtaatctttaaaatgttataa |
10935174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 397 - 701
Target Start/End: Complemental strand, 45407428 - 45407119
Alignment:
| Q |
397 |
attaatcgtaatttattaactacttgagtctaattgctagaggagttatacatttatcgaacatgaagtcgtgaattttgatgcaatgcactatggtcat |
496 |
Q |
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| T |
45407428 |
attaatcgtaacttattaaccacttaagtttaattgttagagaagtcatacatttatcaaacacgaagtcataaattttgatgcattgcactatggtcat |
45407329 |
T |
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| Q |
497 |
---taaataaaccagtcacacga-------cgctagacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatac |
586 |
Q |
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| T |
45407328 |
gattaaataaaccagtcacacgagtcacgacgctagacagcttgta--ttaattgtttattattggtgtatttggtgatggctgatatctaagacaatac |
45407231 |
T |
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| Q |
587 |
tttaaagttgttaagctgttaatcatattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacagg |
686 |
Q |
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| T |
45407230 |
tttaaagttgttaagctattaatcatattgctgcaactgattttgta--tataatcgtaccttgtgaatgataggtgct-atactggtacattatacatg |
45407134 |
T |
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| Q |
687 |
tagtatacatagaaa |
701 |
Q |
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| T |
45407133 |
tagtatacatagaaa |
45407119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 45407654 - 45407596
Alignment:
| Q |
151 |
aacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgat |
209 |
Q |
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| T |
45407654 |
aacacttataataagacattcatgttacgattactgcaatgaacatggccggctttgat |
45407596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 45407468 - 45407426
Alignment:
| Q |
339 |
ttggtagaaaatcatttccatccaagattcatctcaaaatatt |
381 |
Q |
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| T |
45407468 |
ttggtagaaaatcatttccattaaagattcatctcaaaatatt |
45407426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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