View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_20 (Length: 449)

Name: NF11309A_low_20
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_20
NF11309A_low_20
[»] chr4 (10 HSPs)
chr4 (164-437)||(50968204-50968477)
chr4 (321-399)||(6067669-6067747)
chr4 (322-395)||(34505290-34505363)
chr4 (321-399)||(31553694-31553772)
chr4 (75-132)||(50968491-50968548)
chr4 (322-396)||(4690134-4690208)
chr4 (321-395)||(33871041-33871115)
chr4 (322-395)||(52818059-52818132)
chr4 (321-395)||(6071145-6071218)
chr4 (20-59)||(50968549-50968588)
[»] chr8 (7 HSPs)
chr8 (318-399)||(40866295-40866376)
chr8 (321-399)||(7895149-7895227)
chr8 (322-398)||(44415934-44416010)
chr8 (317-399)||(42014301-42014383)
chr8 (321-395)||(24864608-24864682)
chr8 (321-395)||(38085946-38086020)
chr8 (323-396)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (321-399)||(3992803-3992881)
chr6 (321-399)||(7432416-7432494)
chr6 (321-399)||(7441933-7442011)
chr6 (321-399)||(7425621-7425699)
chr6 (323-396)||(7432982-7433055)
chr6 (321-399)||(7418530-7418608)
chr6 (321-399)||(7414581-7414659)
[»] chr3 (9 HSPs)
chr3 (321-395)||(29618312-29618386)
chr3 (317-395)||(41552096-41552174)
chr3 (321-395)||(11580203-11580277)
chr3 (323-395)||(1488013-1488085)
chr3 (323-395)||(2031252-2031324)
chr3 (323-395)||(35679472-35679544)
chr3 (321-395)||(35687869-35687943)
chr3 (321-395)||(52638656-52638730)
chr3 (321-368)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (317-396)||(3197563-3197642)
chr2 (314-399)||(34643000-34643085)
chr2 (315-395)||(39082462-39082542)
chr2 (320-395)||(24359790-24359865)
chr2 (321-395)||(4713110-4713184)
chr2 (321-399)||(8884447-8884525)
chr2 (321-396)||(36772397-36772472)
chr2 (321-396)||(36793511-36793586)
chr2 (321-396)||(37559326-37559401)
chr2 (321-395)||(42968150-42968224)
chr2 (321-395)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (319-396)||(37022194-37022271)
chr7 (321-401)||(30034301-30034381)
chr7 (319-399)||(46075148-46075228)
chr7 (317-395)||(25287956-25288034)
chr7 (323-399)||(46972135-46972211)
chr7 (317-395)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (316-397)||(23058051-23058132)
chr1 (320-399)||(30340907-30340986)
chr1 (319-395)||(37369512-37369588)
chr1 (323-397)||(23057679-23057753)
chr1 (323-397)||(23057864-23057938)
chr1 (323-397)||(23061980-23062054)
chr1 (317-399)||(30320741-30320823)
chr1 (328-381)||(23057568-23057621)
chr1 (328-381)||(23061869-23061922)
chr1 (323-396)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (321-396)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 164 - 437
Target Start/End: Complemental strand, 50968477 - 50968204
Alignment:
Q  164 atctaggattcttaccaatgtcagaggactctacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctacgtgcaaccat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50968477 atctaggattcttaccaatgtcagaggactctacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctatgtgcaaccat 50968378  T
Q  264 gctatccggtttttctataacataatattttattgatcaagagaatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcg 363  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968377 gctatccggtttttctataacataatattttaatgatcaagaggatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcg 50968278  T
Q  364 agaggcacggggttcgatcccccgcatctccattttataatttcaaatattccttttttcgcttattacatatt 437  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50968277 agaggcacggggttcgatcccccgcatctccattttttaatttcaaatattccttttttcgcttattacatatt 50968204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 6067669 - 6067747
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||    
T  6067669 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccatttt 6067747  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  322 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 31553694 - 31553772
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 31553772  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 50968548 - 50968491
Alignment:
Q  75 attgaaggcttcaagagaaaaatgaaaagtgattatgaagccaatacctgtttggcag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968548 attgaaggcttcaagagaaaaatgaaaagtgattatgaagccaatacctgtttggcag 50968491  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 396
Target Start/End: Complemental strand, 4690208 - 4690134
Alignment:
Q  322 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 4690134  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 33871115 - 33871041
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  33871115 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  322 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 6071145 - 6071218
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||  | ||||| ||| |||||||||||||    
T  6071145 atggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctcca 6071218  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 50968588 - 50968549
Alignment:
Q  20 aataagtcgtaaggttatcaaacaattttttgctacaact 59  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  50968588 aataagtggtaaggttatcgaacaattttttgctacaact 50968549  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 40866376 - 40866295
Alignment:
Q  318 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866376 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 40866295  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 7895227 - 7895149
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  7895227 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatttt 7895149  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 398
Target Start/End: Original strand, 44415934 - 44416010
Alignment:
Q  322 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattt 398  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattt 44416010  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 42014301 - 42014383
Alignment:
Q  317 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  42014301 caacttgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccatttt 42014383  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 24864608 - 24864682
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  24864608 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 9963358 - 9963285
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 9963285  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 3992881 - 3992803
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992881 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 3992803  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 7432494 - 7432416
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 7432416  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 7442011 - 7441933
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccatttt 7441933  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 7425699 - 7425621
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| | ||| |||||||||||||||||    
T  7425699 atggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccatttt 7425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 7433055 - 7432982
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||| |||||| ||||| ||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccat 7432982  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 7418608 - 7418530
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| |||||| || |||||||| ||||| |||||| |||||| | ||| |||| ||||||||||||    
T  7418608 atggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccatttt 7418530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 7414659 - 7414581
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||| | |||||||||||||||||| ||||| |||||| | |||| ||||| ||  ||| |||||||||    
T  7414659 atggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgataccttgcaactccatttt 7414581  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 41552096 - 41552174
Alignment:
Q  317 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  41552096 caacatggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 11580203 - 11580277
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  11580203 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 35679472 - 35679544
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 35692217 - 35692264
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 368  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 35692264  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 3197563 - 3197642
Alignment:
Q  317 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3197563 caacctggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 34643085 - 34643000
Alignment:
Q  314 tttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  34643085 tttcaacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 34643000  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 39082462 - 39082542
Alignment:
Q  315 ttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  39082462 ttcatcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 24359790 - 24359865
Alignment:
Q  320 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  24359790 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 8884447 - 8884525
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  8884447 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 8884525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 36772472 - 36772397
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36772397  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 36793586 - 36793511
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36793511  T

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Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 37559401 - 37559326
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  37559401 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 37559326  T

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Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 37022271 - 37022194
Alignment:
Q  319 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  37022271 acatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 37022194  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 30034301 - 30034381
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttat 401  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttat 30034381  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 46075228 - 46075148
Alignment:
Q  319 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  46075228 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 46075148  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 25287956 - 25288034
Alignment:
Q  317 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  25287956 caacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 46972211 - 46972135
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccatttt 46972135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 34984508 - 34984430
Alignment:
Q  317 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  34984508 caacaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 23058132 - 23058051
Alignment:
Q  316 tcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 397  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  23058132 tcaacaaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatt 23058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 30340986 - 30340907
Alignment:
Q  320 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||||||    
T  30340986 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccatttt 30340907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 37369588 - 37369512
Alignment:
Q  319 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 395  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  37369588 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 23057753 - 23057679
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 23057938 - 23057864
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 397  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccatt 23057864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 23062054 - 23061980
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23061980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 30320823 - 30320741
Alignment:
Q  317 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 399  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||||||    
T  30320823 caacttggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccatttt 30320741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 23057621 - 23057568
Alignment:
Q  328 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 381  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 23061922 - 23061869
Alignment:
Q  328 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 381  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23061869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 43065996 - 43066074
Alignment:
Q  323 ggggatgtagctcaaatggtagagcgctcgc-----tttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||| ||||||||||||||||     || |||||||||||| |||||| ||||| ||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccat 43066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 2626146 - 2626071
Alignment:
Q  321 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 396  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  2626146 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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