View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_210 (Length: 250)
Name: NF11309A_low_210
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_210 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 53795260 - 53795037
Alignment:
| Q |
1 |
aaatgacagtactggatatgagttacgaaggggaagaatcgagaacattattgatcccgttttnnnnnnnttgatcaaaatttgaagttaaatttgcatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||| |
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| T |
53795260 |
aaatgacagtactggatatgagttacgaaggggaagaatggagaacattcttgacccccttttaaaaaaattgatcaaaatttgaagttaaatttgcatc |
53795161 |
T |
|
| Q |
101 |
ataattatgtggagagtctaagtagcagtgtgtggttggttctgtaagaatgttggcttaaatttaatagagatggcgctgttaccgattttgaaggtcg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
53795160 |
ataattatgtggagagtctaagtagcagtgtgtggttggttctgtaagaatgttggcttaaatttaatggagatggcgctgttaccgattttggaggtcg |
53795061 |
T |
|
| Q |
201 |
tgcaacgtgtggtgggggttgtcc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
53795060 |
tgcaacgtgtggtgggggttgtcc |
53795037 |
T |
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