View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_212 (Length: 250)
Name: NF11309A_low_212
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_212 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 11565499 - 11565736
Alignment:
| Q |
6 |
atgcaagtgcactacaaattgttggaattaaacacttgtttcttctttactcaatcagttatcaatacctattatctatccattcacgtgaaacacaact |
105 |
Q |
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| T |
11565499 |
atgcaagtgcactacaaattgttggaattaaacacttgtttcttctttactcaatcagttatcaatacctattatctatccattcacgtgaaacacaact |
11565598 |
T |
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| Q |
106 |
tcttcgacgaacccgaactaccacaacgcagttaatcctctgttccccataactcaccacaatctgcgccatttccgtcgttcatgtctatgcaccattt |
205 |
Q |
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| T |
11565599 |
tcttcgacgaacccgaactaccacaacgcagttaatcctctgttccccattactcaccacaatctgcgccatttccgtcgttcatgtctatgcaccattt |
11565698 |
T |
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| Q |
206 |
cccaccctcgatctaatctctatccgttcatttcactc |
243 |
Q |
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| T |
11565699 |
cccaccctcgatctaatatctatccgttcatttcactc |
11565736 |
T |
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