View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_213 (Length: 250)
Name: NF11309A_low_213
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_213 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 47 - 243
Target Start/End: Complemental strand, 45592875 - 45592679
Alignment:
| Q |
47 |
atataaataaaataagttcttacctcaagttttctcaattcagcttctttagcagctttcttactgttctcccatgctgttatggttgaaagtcttctct |
146 |
Q |
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| T |
45592875 |
atataaataaaataagttcttacctcaagttttctcaattcagcttctttagcagctttcttactgttctcccatgctgttatggttgaaagtcttctct |
45592776 |
T |
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| Q |
147 |
gagctctgctcatcaaattcatgactcgaggtaataaggttctaaaaatttgaaaattaaacattagatggtgaaagctcttacttgttctctgctt |
243 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45592775 |
gagctctgctcatcaaattcatgactcgatgtaataaggttctaaaaatttgaaaattaaacattagatggtgaaagctcttacttgttctctgctt |
45592679 |
T |
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