View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_216 (Length: 250)
Name: NF11309A_low_216
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_216 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 17435581 - 17435820
Alignment:
| Q |
11 |
acaaaaagtgctgagtactatgcaagtatatgatcaagattggatatatgaaagaatattaatataaaatctgacaccaaattgaaattttgcgtcatat |
110 |
Q |
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| T |
17435581 |
acaaaaagtgttgagtactatgcaagtatatgatcaagattggatatatgaaaggatattaatataaaatctgacaccaaattgagattttgcgtcatat |
17435680 |
T |
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| Q |
111 |
gaattgtaaaactgaagaaattctcagcaatacaagaaacaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagttagg |
210 |
Q |
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| T |
17435681 |
gaattgtaaaactgaagaaattctcagctatataacaaacaagagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagttagg |
17435780 |
T |
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| Q |
211 |
ctttgtttgacataaaataattgagtgtgtcggtattatt |
250 |
Q |
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| T |
17435781 |
ctttgtttgacataaaataattgagtgtgtcggtattatt |
17435820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 17456657 - 17456895
Alignment:
| Q |
22 |
tgagtactatgcaagtatatgatcaagattggatatatgaaagaatattaatataaaatctgacaccaaattgaaattttgcgtcatatg---------- |
111 |
Q |
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| T |
17456657 |
tgagtgctatgcaagtatatgataaaaaatggatatatgaaagaaaac-aatataaaatttgacatcaaattaagatttcgcatcatatgaaacgggtat |
17456755 |
T |
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| Q |
112 |
-aattgtaaaactgaagaaattctcagcaatacaagaaacaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagttagg |
210 |
Q |
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| T |
17456756 |
gaattgtaaaactggagaaattctcagcaatacaagaaacaaaagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagttagg |
17456855 |
T |
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| Q |
211 |
ctttgtttgacataaaataattgagtgtgtcggtattatt |
250 |
Q |
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| T |
17456856 |
ctttgtttgacataaaataattgagtgtgttgatattatt |
17456895 |
T |
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