View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_217 (Length: 249)
Name: NF11309A_low_217
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_217 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 51181953 - 51181711
Alignment:
| Q |
7 |
ctgagatgaataaatcgactttagattctgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaa |
106 |
Q |
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| T |
51181953 |
ctgagatgaataaatcgactttagattccgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaa |
51181854 |
T |
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| Q |
107 |
ctgcagttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcagtgagaggctcctagagctgctgcagatgcaattgcagcagaagc |
206 |
Q |
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| T |
51181853 |
ctgcagttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcagtgagaggctactagagctgctgcagatgcaattgcagcagaagc |
51181754 |
T |
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| Q |
207 |
catgataggtttctcttggttgggattcggcttttcggatgat |
249 |
Q |
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| T |
51181753 |
catggtagggttcttttggttgggattaggcttttcggatgat |
51181711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 14180717 - 14180956
Alignment:
| Q |
10 |
agatgaataaatcgactttagattctgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaactg |
109 |
Q |
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| T |
14180717 |
agatgaataaatcaactttaaattctgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaactg |
14180816 |
T |
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| Q |
110 |
cagttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcagtgagaggctcctagagctgctgcagatgcaattgcagcagaagccat |
209 |
Q |
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| T |
14180817 |
ctgttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcaatgagaggctactagagctgtggcagatgcaattgcagcagaagccat |
14180916 |
T |
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| Q |
210 |
gataggtttctcttggttgggattcggcttttcggatgat |
249 |
Q |
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| T |
14180917 |
ggtagggttcttttggttgggattaggcttttcggatgat |
14180956 |
T |
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