View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_218 (Length: 249)
Name: NF11309A_low_218
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_218 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 40684404 - 40684650
Alignment:
| Q |
5 |
tagccactatttgacaacactttgtaatccagtgcattgcagaacaataatagcaatatgttcaaattccgctaagctataacactatnnnnnnnngcag |
104 |
Q |
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| T |
40684404 |
tagccactatttgacaacactttgtaattaagtgcattgcagaacaataatagcaatatgttcaaattccgctatgctacaacactatcaaaaaa-gcag |
40684502 |
T |
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| Q |
105 |
aatgctgtcattatacgatcgaaaaagccacagttagagacc----------------atgcactgtttgaagatggaaacaacttcggctttggaattt |
188 |
Q |
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| T |
40684503 |
aatgctgtcattatacgatcgaaaaagccacagttagagaccttaaaatgtattatagatgcattgtttgaagatggaaacaacttcggctttggaattt |
40684602 |
T |
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| Q |
189 |
gtattcggaacagccagggagttatggtccaa-cacggactgggtggt |
235 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40684603 |
gtattcggaacagccagggagttatggtccaagcacggactgggtggt |
40684650 |
T |
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