View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_219 (Length: 249)

Name: NF11309A_low_219
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_219
NF11309A_low_219
[»] chr4 (5 HSPs)
chr4 (11-234)||(24666621-24666844)
chr4 (11-234)||(34941558-34941782)
chr4 (11-234)||(18363426-18363645)
chr4 (11-234)||(36599283-36599502)
chr4 (58-133)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (11-130)||(26240615-26240735)
chr1 (150-234)||(26240779-26240863)
[»] chr2 (2 HSPs)
chr2 (71-241)||(19697406-19697568)
chr2 (180-234)||(13265597-13265651)
[»] chr3 (2 HSPs)
chr3 (58-234)||(53242722-53242900)
chr3 (35-186)||(43479315-43479456)
[»] chr8 (1 HSPs)
chr8 (121-225)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
Q  11 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666621 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 24666720  T
Q  111 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |    
T  24666721 cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca 24666820  T
Q  211 accattgattcaatcaaacggtat 234  Q
    ||||||||||||||||||||||||    
T  24666821 accattgattcaatcaaacggtat 24666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 34941782 - 34941558
Alignment:
Q  11 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 109  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34941782 agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 34941683  T
Q  110 acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta 209  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||  ||||||||||||||| |||||||||| |||||||| |||||||||     
T  34941682 acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc 34941583  T
Q  210 aaccattgattcaatcaaacggtat 234  Q
    |||| ||||||||||||||||||||    
T  34941582 aaccgttgattcaatcaaacggtat 34941558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 18363426 - 18363645
Alignment:
Q  11 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  18363426 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 18363523  T
Q  111 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 210  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  18363524 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 18363621  T
Q  211 accattgattcaatcaaacggtat 234  Q
    ||||||||||||||| || |||||    
T  18363622 accattgattcaatcgaatggtat 18363645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 36599502 - 36599283
Alignment:
Q  11 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  36599502 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 36599405  T
Q  111 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 210  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  36599404 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 36599307  T
Q  211 accattgattcaatcaaacggtat 234  Q
    ||||||||||||||| || |||||    
T  36599306 accattgattcaatcgaatggtat 36599283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
Q  58 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 133  Q
    |||||||||||| ||| ||||||||||||||| ||||||| | | | |||| ||  ||||||||||||||||||||    
T  8752465 tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag 8752390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
Q  11 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 109  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26240615 agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 26240714  T
Q  110 acagatttcagaggagttgaa 130  Q
    ||| ||||||  |||||||||    
T  26240715 acatatttcaagggagttgaa 26240735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 26240779 - 26240863
Alignment:
Q  150 agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 234  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtat 26240863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 19697568 - 19697406
Alignment:
Q  71 aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa 170  Q
    ||||||||||||||||||| |||||||||||||| ||||       | || ||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  19697568 aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa 19697476  T
Q  171 aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatattattc 241  Q
    |||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| |||| ||||||    
T  19697475 aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtattttattc 19697406  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
Q  180 atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 234  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  13265651 atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat 13265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 53242900 - 53242722
Alignment:
Q  58 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca 156  Q
    |||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| |   |||||||| |||||||| ||||||||||||| |||    
T  53242900 tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca 53242801  T
Q  157 agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtat 234  Q
    | |||  | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  53242800 aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtat 53242722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
Q  35 tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 133  Q
    |||| ||||||| || | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||           | |||||||| |     
T  43479315 tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa 43479403  T
Q  134 gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct 186  Q
    ||||||||||||||||||| |||| |||  |||| |||||||||| |||||||    
T  43479404 gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct 43479456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
Q  121 aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt 220  Q
    |||||||||| | ||||| ||||||||||||||||||||||  |||| ||||||| || |||||||||||||  |||| |||||||||  |||||||| |    
T  32566462 aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat 32566558  T
Q  221 caatc 225  Q
    |||||    
T  32566559 caatc 32566563  T

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