View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_220 (Length: 249)
Name: NF11309A_low_220
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_220 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 1841558 - 1841338
Alignment:
| Q |
14 |
atcaaccacaagaacaagaacaagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaaaacatatattttgtcttttgataattc |
113 |
Q |
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| T |
1841558 |
atcaaccacaagaacaagaacaagaacatggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattc |
1841459 |
T |
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| Q |
114 |
aactatgataccagctacacctaattataagaataataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatagagtgaag |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1841458 |
aactatgataccagctacacctaattataaga---ataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatggagtgaag |
1841362 |
T |
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| Q |
214 |
agaggtagaagcagttcacagtgt |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
1841361 |
agaggtagaagcagttcacagtgt |
1841338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 1824258 - 1824138
Alignment:
| Q |
14 |
atcaaccacaagaacaagaacaagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaaaacatatattttgtcttttgataattc |
113 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1824258 |
atcaaccacaagaacaagaacaacaacatggtttgaaatcgaaaaaggttcctcgtaaaagttcttctccaaagacatatattttgtcttttgataattc |
1824159 |
T |
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| Q |
114 |
aactatgataccagctacacc |
134 |
Q |
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||||||||||||||||||||| |
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| T |
1824158 |
aactatgataccagctacacc |
1824138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 1824109 - 1824021
Alignment:
| Q |
148 |
aataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaa---atagagtgaagagaggtagaagcagttcaca |
233 |
Q |
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||||||||||||| |||||||| |||||| |||| |||||| |||||||||| || ||||||||| |||||||||||||||||| |
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| T |
1824109 |
aataaacgtagccgtgaaagtactcaaaaagctgaagtgaaaactaatcaacaaatcaatggagtgaagaaaggtagaagcagttcaca |
1824021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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