View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_231 (Length: 246)
Name: NF11309A_low_231
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_231 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 31700742 - 31700972
Alignment:
| Q |
11 |
atgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtgg |
110 |
Q |
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| T |
31700742 |
atgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtgg |
31700841 |
T |
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| Q |
111 |
tacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31700842 |
tacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtgacca |
31700941 |
T |
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| Q |
211 |
ctatggtctat-tggagtcaatggatactgc |
240 |
Q |
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| T |
31700942 |
ctatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 31723292 - 31723521
Alignment:
| Q |
8 |
gagatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
107 |
Q |
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||||||||||||||| ||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
31723292 |
gagatgaagcctaattctattttcagttacaattttgtctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaag |
31723391 |
T |
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| Q |
108 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga |
207 |
Q |
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| T |
31723392 |
tggtacttaaccaaaccagtaacgatcgtccacgatacgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtga |
31723491 |
T |
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| Q |
208 |
ccactatggtctat-tggagtcaatggata |
236 |
Q |
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| T |
31723492 |
ccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 31716051 - 31716276
Alignment:
| Q |
12 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
111 |
Q |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31716051 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31716150 |
T |
|
| Q |
112 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
211 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31716151 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31716250 |
T |
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| Q |
212 |
tatggtctat-tggagtcaatggata |
236 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31716251 |
tatggtcaatgtggagtcaatggata |
31716276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 31721925 - 31722150
Alignment:
| Q |
12 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
111 |
Q |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31721925 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31722024 |
T |
|
| Q |
112 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
211 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31722025 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31722124 |
T |
|
| Q |
212 |
tatggtctat-tggagtcaatggata |
236 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31722125 |
tatggtcaatgtggagtcaatggata |
31722150 |
T |
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