View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_233 (Length: 246)

Name: NF11309A_low_233
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_233
NF11309A_low_233
[»] chr3 (2 HSPs)
chr3 (36-213)||(19910952-19911130)
chr3 (28-160)||(30406815-30406949)
[»] chr6 (2 HSPs)
chr6 (51-157)||(10382590-10382697)
chr6 (47-187)||(30613968-30614109)
[»] chr5 (1 HSPs)
chr5 (30-136)||(7003523-7003629)
[»] scaffold0728 (2 HSPs)
scaffold0728 (27-131)||(1314-1418)
scaffold0728 (27-131)||(6254-6358)
[»] chr7 (1 HSPs)
chr7 (27-160)||(9084336-9084471)
[»] scaffold0128 (1 HSPs)
scaffold0128 (27-131)||(41446-41550)
[»] chr1 (4 HSPs)
chr1 (27-138)||(17083685-17083796)
chr1 (48-99)||(25094756-25094807)
chr1 (101-134)||(33260486-33260519)
chr1 (101-134)||(33280645-33280678)
[»] chr8 (1 HSPs)
chr8 (63-131)||(30926636-30926704)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 19911130 - 19910952
Alignment:
Q  36 ttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtgggatga 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19911130 ttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgttagaaaataaattattaactatggcgcaaatgtttcatttggggtgggatga 19911031  T
Q  136 gggggaaggcgtggaagtggagaagaagtctaatggtatgggagaaggagttctt--tggagtattggattttattaatg 213  Q
     |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||  |||||| ||| ||||||||||||    
T  19911030 agggg-aggcgtggaagtggagaagaagtctaagggtatgggagaaagagttcttagtggagtgttgaattttattaatg 19910952  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 30406949 - 30406815
Alignment:
Q  28 taggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttgggg 127  Q
    ||||||||||| |||||||||||||   ||| | |||||| | ||||||||||| |||||||| ||||| |||||| |||||||||||||| ||||||||    
T  30406949 taggtgggttgatgatgtccctctttgagttagatttcgttgtttgtttgatttatcagaaaagaaattgttaactgtggcgcaaatgtttgatttgggg 30406850  T
Q  128 tgggatgagg--gggaaggcgtggaagtggagaag 160  Q
    ||| | ||||  ||| |||||||||||||||||||    
T  30406849 tggaacgagggaggggaggcgtggaagtggagaag 30406815  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 10382590 - 10382697
Alignment:
Q  51 ttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtgggatg-agggggaaggcgtgg 149  Q
    ||||||||||||||||  |||||||||| || ||| ||||||| || |||||| |||||||||||||| |||| |||||||||| |||||| |||||||     
T  10382590 ttcaggttcgttttcgctgcttgtttgaattatcataaaataattttttaactgtggcgcaaatgtttgatttagggtgggatgaaggggggaggcgtga 10382689  T
Q  150 aagtggag 157  Q
    ||||||||    
T  10382690 aagtggag 10382697  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 30614109 - 30613968
Alignment:
Q  47 cctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaacta--tggcgcaaatgtttcatttggggtgggatgagggggaagg 144  Q
    |||||||||||||||||| |||| || |||||||| |||||||||||||    |||    |||||||||| ||| | ||||||||||| ||||||| |||    
T  30614109 cctcttcaggttcgtttttgtcggttatttgatttatcagaaaataaatatgcaacacggtggcgcaaatatttaacttggggtgggacgaggggggagg 30614010  T
Q  145 cgtggaagtggagaagaagtctaatggtatgggagaaggagtt 187  Q
    ||||||||||||| |||||| ||  ||| |||||| |||||||    
T  30614009 cgtggaagtggag-agaagtttacgggtgtgggaggaggagtt 30613968  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 7003629 - 7003523
Alignment:
Q  30 ggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtg 129  Q
    |||||||||||||||||||| |||  ||||| |||   || ||||||||||| |||||||||||||| |||| | || ||||||||||| ||||||||||    
T  7003629 ggtgggttggtgatgtcccttttcgagttcgatttttccgtttgtttgatttatcagaaaataaattgttaattgtgtcgcaaatgtttgatttggggtg 7003530  T
Q  130 ggatgag 136  Q
    |||||||    
T  7003529 ggatgag 7003523  T

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Target: scaffold0728 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 1314 - 1418
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    |||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| | | |||||| |||||| |   |||||||||| ||| |||||||    
T  1314 ataggtgggtaggtgaggtccctcttcaagttcgtttttgtcgcttgtttgatttattacaaaatacattattgatggtggcgcaaatctttgatttggg 1413  T
Q  127 gtggg 131  Q
    |||||    
T  1414 gtggg 1418  T

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Target: scaffold0728; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 6254 - 6358
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    |||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| | | |||||| |||||| |   |||||||||| ||| |||||||    
T  6254 ataggtgggtaggtgaggtccctcttcaagttcgtttttgtcgcttgtttgatttattacaaaatacattattgatggtggcgcaaatctttgatttggg 6353  T
Q  127 gtggg 131  Q
    |||||    
T  6354 gtggg 6358  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 9084471 - 9084336
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    |||||||||| ||||| || ||  | ||||||||||||| ||| || ||||||||||| ||||||||||| |||| |   ||||||||||| ||  ||||    
T  9084471 ataggtgggtaggtgaggttcccttgcaggttcgttttcatcggttatttgatttgtctgaaaataaatttttaattgctgcgcaaatgttccagctggg 9084372  T
Q  127 gtgggatgagg--gggaaggcgtggaagtggagaag 160  Q
    |||||| ||||  ||| |||||||||||||||||||    
T  9084371 gtgggacgagggaggggaggcgtggaagtggagaag 9084336  T

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Target: scaffold0128 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 41446 - 41550
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    ||||||||||||||||| | |||||||  | | | | ||| || ||||||||||| ||||| | ||||||  |||||||||| ||||||||| |||||||    
T  41446 ataggtgggttggtgatcttcctcttcgagataggtatcggcgtttgtttgatttatcagagagtaaatttctaactatggcacaaatgtttaatttggg 41545  T
Q  127 gtggg 131  Q
    |||||    
T  41546 gtggg 41550  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 17083685 - 17083796
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    ||||||||||||| ||| | ||| |||| || || ||||| || || ||||||||||| || ||||||||  ||||  | || |||||||||||||||||    
T  17083685 ataggtgggttggggatattccttttcatgtccgctttcgccggttatttgatttgtctgataataaatttctaaccgtagctcaaatgtttcatttggg 17083784  T
Q  127 gtgggatgaggg 138  Q
    ||||| ||||||    
T  17083785 gtggggtgaggg 17083796  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 25094807 - 25094756
Alignment:
Q  48 ctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattatt 99  Q
    ||||||||||| ||||||||||||| |||  ||| |||||||||||||||||    
T  25094807 ctcttcaggtttgttttcgtcgcttatttattttatcagaaaataaattatt 25094756  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 33260486 - 33260519
Alignment:
Q  101 actatggcgcaaatgtttcatttggggtgggatg 134  Q
    |||||||||||||||||||||| |||||||||||    
T  33260486 actatggcgcaaatgtttcattgggggtgggatg 33260519  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 33280645 - 33280678
Alignment:
Q  101 actatggcgcaaatgtttcatttggggtgggatg 134  Q
    |||||||||||||||||||||| |||||||||||    
T  33280645 actatggcgcaaatgtttcattgggggtgggatg 33280678  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 30926636 - 30926704
Alignment:
Q  63 ttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtggg 131  Q
    ||||||||||||||||||| |||||||||||||  ||||||  ||| |||| |||| |||| |||||||    
T  30926636 ttcgtcgcttgtttgatttatcagaaaataaatagttaacttgggcacaaacgtttgatttagggtggg 30926704  T

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