View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_236 (Length: 245)
Name: NF11309A_low_236
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_236 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 38567069 - 38567284
Alignment:
| Q |
9 |
cttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaat |
108 |
Q |
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| T |
38567069 |
cttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaat |
38567168 |
T |
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| Q |
109 |
aaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567169 |
aaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacat |
38567268 |
T |
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| Q |
209 |
tttgtaagccgccgcc |
224 |
Q |
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|||||||||||||||| |
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| T |
38567269 |
tttgtaagccgccgcc |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 38525944 - 38526162
Alignment:
| Q |
9 |
cttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaat |
108 |
Q |
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||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38525944 |
cttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaat |
38526043 |
T |
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| Q |
109 |
aaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacat |
208 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526044 |
aaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacat |
38526143 |
T |
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| Q |
209 |
tttgtaagccgccgcctga |
227 |
Q |
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||||||||||||||||||| |
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| T |
38526144 |
tttgtaagccgccgcctga |
38526162 |
T |
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