View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_237 (Length: 245)
Name: NF11309A_low_237
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_237 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 5173130 - 5172905
Alignment:
| Q |
12 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
111 |
Q |
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| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
|
| Q |
112 |
ggaaaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtca |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||| || || || |||| |||||||| |||||| ||||||||||||||||||||||| || | | |
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| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataa |
5172931 |
T |
|
| Q |
212 |
atgaaaatgatcattgcatgtaattt |
237 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
5172930 |
gtgaaaatgatccttgcatgtaattt |
5172905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 5160213 - 5159981
Alignment:
| Q |
13 |
atcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
113 |
gaaaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaa |
212 |
Q |
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| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaa |
5160014 |
T |
|
| Q |
213 |
tgaaaatgatcattgcatgtaatttccaaagaa |
245 |
Q |
| |
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||||||||||| |||||||||||||||| |||| |
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| T |
5160013 |
tgaaaatgatccttgcatgtaatttccatagaa |
5159981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 4842395 - 4842620
Alignment:
| Q |
12 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
|
| Q |
112 |
ggaaaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtca |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||| || || | ||||||||||||||| ||||||||||||||||||||||| || | | |
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| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataa |
4842594 |
T |
|
| Q |
212 |
atgaaaatgatcattgcatgtaattt |
237 |
Q |
| |
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||||||||||| ||||||||||||| |
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|
| T |
4842595 |
gtgaaaatgatccttgcatgtaattt |
4842620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 5182464 - 5182229
Alignment:
| Q |
7 |
aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5182464 |
aagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
5182365 |
T |
|
| Q |
107 |
atttaggaaaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggt |
206 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
5182364 |
atttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagt |
5182268 |
T |
|
| Q |
207 |
ggtcaatgaaaatgatcattgcatgtaatttccaaagaa |
245 |
Q |
| |
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| ||||||||||||||| |||||||||||||||| |||| |
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| T |
5182267 |
gctcaatgaaaatgatccttgcatgtaatttccatagaa |
5182229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 4856867 - 4857097
Alignment:
| Q |
7 |
aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
106 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4856867 |
aagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
4856966 |
T |
|
| Q |
107 |
atttaggaaaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggt |
206 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
4856967 |
atttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagt |
4857063 |
T |
|
| Q |
207 |
ggtcaatgaaaatgatcattgcatgtaatttcca |
240 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
4857064 |
ggtcaatgaaaatgatccttgcatgtaatttcca |
4857097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 5195853 - 5195623
Alignment:
| Q |
15 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
|
| Q |
115 |
aaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatg |
214 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || | || || | ||||||||||||| | ||||||||| ||||||||||| ||| |||||| |
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|
| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatg |
5195654 |
T |
|
| Q |
215 |
aaaatgatcattgcatgtaatttccaaagaa |
245 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |
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|
| T |
5195653 |
aaaatgatccttgcatgtaatttccatagaa |
5195623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 5214021 - 5213790
Alignment:
| Q |
10 |
aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatt |
109 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
|
| Q |
110 |
taggaaaccattttgttttttcagtttcaatgtgtactcctgtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggt |
209 |
Q |
| |
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| || ||||| ||||| |||||||||||||||| | | || | || |||| | ||||||||||||||| || |||||||||||||||||||| ||| | |
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| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgct-ttgt--gatgaaatatatagatgctggagattggagtgattagccaaagtgct |
5213825 |
T |
|
| Q |
210 |
caatgaaaatgatcattgcatgtaatttccaaaga |
244 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
5213824 |
caatgaaaatgatccttgcatgtaatttccaaaga |
5213790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 7142390 - 7142257
Alignment:
| Q |
15 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
114 |
Q |
| |
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|||||||| |||||| |||| |||| ||||||||||| |||||||||| ||||| ||||||||||| ||| || |||| | | ||||||| ||||| |
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| T |
7142390 |
caaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctagga |
7142292 |
T |
|
| Q |
115 |
aaccattttgttttttcagtttcaatgtgtactcc |
149 |
Q |
| |
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||||| ||||| ||||||||||||| ||||||||| |
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|
| T |
7142291 |
aaccactttgtattttcagtttcaacgtgtactcc |
7142257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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