View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_239 (Length: 244)
Name: NF11309A_low_239
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_239 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 18029049 - 18029249
Alignment:
| Q |
23 |
agacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcgatggttttagattctggtcacatgaatgggagaaacatggtaca |
122 |
Q |
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| T |
18029049 |
agacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagattctggtcacatgaatgggagaaacatggtaca |
18029148 |
T |
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| Q |
123 |
tgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaactcaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaaca |
222 |
Q |
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| T |
18029149 |
tgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaacttaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaaca |
18029248 |
T |
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| Q |
223 |
a |
223 |
Q |
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| T |
18029249 |
a |
18029249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 18034871 - 18035046
Alignment:
| Q |
48 |
aattggccatctctgagctgtccaagtagcgatggttttagattctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaac |
147 |
Q |
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| T |
18034871 |
aattggccatctttgagctgccctagtggaaatggtattagactttggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaac |
18034970 |
T |
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| Q |
148 |
atgagtactttgaaactgctcttaaactcaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaacaa |
223 |
Q |
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| T |
18034971 |
atgactactttcaaacagctctcaaactcaagaaaaaatcgaatcttctccagatccttaagaatgcaggtaacaa |
18035046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 18047613 - 18047699
Alignment:
| Q |
93 |
tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaactcaag |
179 |
Q |
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| T |
18047613 |
tggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaactcaag |
18047699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 18052596 - 18052682
Alignment:
| Q |
93 |
tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaactcaag |
179 |
Q |
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| T |
18052596 |
tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaag |
18052682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 17999654 - 17999728
Alignment:
| Q |
89 |
attctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaac |
163 |
Q |
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| T |
17999654 |
attctggacacatgaatgggagaaacatggtacttgttcagaatcagttcttaagcaacatgattattttgaaac |
17999728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 3616802 - 3616899
Alignment:
| Q |
22 |
tagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcgatggttttagattctggtcacatgaatgggagaaacatggt |
119 |
Q |
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| T |
3616802 |
tagacctaattaagaacatgtagaagaattgaccatctttgagctgtccaagcagcaattgttttagattctagtcacatgaatgggagaaacatggt |
3616899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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