View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_240 (Length: 244)
Name: NF11309A_low_240
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_240 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 13271 - 13061
Alignment:
| Q |
15 |
acaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagcc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13271 |
acaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagcc |
13172 |
T |
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| Q |
115 |
agtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13171 |
agtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatcc |
13072 |
T |
|
| Q |
215 |
gcaaaatcttt |
225 |
Q |
| |
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||||||||||| |
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| T |
13071 |
gcaaaatcttt |
13061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 21008 - 20798
Alignment:
| Q |
15 |
acaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagcc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21008 |
acaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagcc |
20909 |
T |
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| Q |
115 |
agtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatcc |
214 |
Q |
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| T |
20908 |
agtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatcc |
20809 |
T |
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| Q |
215 |
gcaaaatcttt |
225 |
Q |
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||||||||||| |
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| T |
20808 |
gcaaaatcttt |
20798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 30128 - 29918
Alignment:
| Q |
15 |
acaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagcc |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30128 |
acaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattcttttgaacatcttccaggggcaaaaaagcc |
30029 |
T |
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| Q |
115 |
agtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatcc |
214 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
30028 |
attatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaatgtcttaaaacaaaaatctgcataatcc |
29929 |
T |
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| Q |
215 |
gcaaaatcttt |
225 |
Q |
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||||||||||| |
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| T |
29928 |
gcaaaatcttt |
29918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 31639108 - 31639059
Alignment:
| Q |
146 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
195 |
Q |
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||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
31639059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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