View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_241 (Length: 244)

Name: NF11309A_low_241
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_241
NF11309A_low_241
[»] chr6 (8 HSPs)
chr6 (77-152)||(1876777-1876853)
chr6 (45-80)||(25562150-25562185)
chr6 (45-80)||(26101664-26101699)
chr6 (45-79)||(7017067-7017101)
chr6 (41-75)||(27967721-27967755)
chr6 (45-79)||(33225439-33225473)
chr6 (45-78)||(31826213-31826246)
chr6 (45-81)||(229546-229581)
[»] chr8 (7 HSPs)
chr8 (45-81)||(41708823-41708859)
chr8 (45-80)||(21692631-21692666)
chr8 (45-78)||(39301879-39301912)
chr8 (45-78)||(43383016-43383049)
chr8 (45-77)||(22686742-22686774)
chr8 (45-77)||(23564101-23564133)
chr8 (45-77)||(45530501-45530533)
[»] chr7 (9 HSPs)
chr7 (41-81)||(1263780-1263820)
chr7 (43-77)||(21852764-21852798)
chr7 (45-79)||(44412558-44412592)
chr7 (45-78)||(18655374-18655407)
chr7 (45-78)||(28000144-28000177)
chr7 (45-78)||(31417528-31417561)
chr7 (45-77)||(43596538-43596570)
chr7 (45-77)||(45639750-45639782)
chr7 (45-77)||(47973884-47973916)
[»] chr5 (8 HSPs)
chr5 (41-77)||(5661896-5661932)
chr5 (45-77)||(28593550-28593582)
chr5 (46-81)||(35936533-35936568)
chr5 (45-79)||(2724481-2724515)
chr5 (41-78)||(16920678-16920715)
chr5 (45-81)||(25963147-25963183)
chr5 (46-78)||(27433518-27433550)
chr5 (49-81)||(37872534-37872566)
[»] chr4 (17 HSPs)
chr4 (45-81)||(26144153-26144189)
chr4 (45-81)||(46360919-46360955)
chr4 (41-76)||(26144369-26144404)
chr4 (41-79)||(27449860-27449898)
chr4 (45-79)||(36405879-36405913)
chr4 (45-78)||(1952733-1952766)
chr4 (45-78)||(35370414-35370447)
chr4 (46-79)||(35904613-35904646)
chr4 (45-78)||(47858455-47858488)
chr4 (45-78)||(54097098-54097131)
chr4 (45-77)||(3475485-3475517)
chr4 (45-81)||(7086092-7086128)
chr4 (45-77)||(12144544-12144576)
chr4 (45-77)||(12878674-12878706)
chr4 (45-77)||(13033152-13033184)
chr4 (45-77)||(33294940-33294972)
chr4 (45-77)||(36405658-36405690)
[»] chr2 (13 HSPs)
chr2 (45-77)||(24951903-24951935)
chr2 (41-75)||(1366790-1366824)
chr2 (45-78)||(7327766-7327799)
chr2 (45-78)||(28739406-28739439)
chr2 (45-78)||(32845455-32845488)
chr2 (45-77)||(8214585-8214617)
chr2 (45-77)||(14793481-14793513)
chr2 (46-78)||(23834493-23834525)
chr2 (45-77)||(24952081-24952113)
chr2 (45-77)||(32845688-32845720)
chr2 (45-77)||(33441504-33441536)
chr2 (45-77)||(36944256-36944288)
chr2 (45-77)||(43766507-43766539)
[»] chr1 (7 HSPs)
chr1 (41-77)||(39657272-39657308)
chr1 (46-79)||(13295832-13295865)
chr1 (45-78)||(26486795-26486828)
chr1 (45-78)||(52413119-52413152)
chr1 (45-77)||(16555324-16555356)
chr1 (46-78)||(24004083-24004115)
chr1 (45-81)||(39160558-39160594)
[»] chr3 (19 HSPs)
chr3 (46-81)||(16876137-16876172)
chr3 (45-80)||(35434098-35434133)
chr3 (41-76)||(51688011-51688046)
chr3 (41-75)||(9161250-9161284)
chr3 (45-79)||(54012614-54012648)
chr3 (46-79)||(9559032-9559065)
chr3 (45-78)||(17261023-17261056)
chr3 (45-78)||(31341224-31341257)
chr3 (46-79)||(41301305-41301338)
chr3 (45-78)||(55090269-55090302)
chr3 (45-77)||(1351493-1351525)
chr3 (45-77)||(11761081-11761113)
chr3 (46-78)||(29853405-29853437)
chr3 (45-77)||(29853653-29853685)
chr3 (45-77)||(33898298-33898330)
chr3 (45-77)||(35359471-35359503)
chr3 (45-77)||(39846606-39846638)
chr3 (45-77)||(46994117-46994149)
chr3 (45-77)||(48418653-48418685)
[»] scaffold0192 (1 HSPs)
scaffold0192 (45-79)||(14473-14507)
[»] scaffold0053 (1 HSPs)
scaffold0053 (45-77)||(29903-29935)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 1876777 - 1876853
Alignment:
Q  77 ttaaacatttagatgtccttaatgataatttttgcatgcttaaagagcacaaatcaaattca-cttcaagttgccat 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1876777 ttaaacatttagatgtccttaatgataatttttgcatgcttaaagagcacaaatcaaattcatcttcaagttgccat 1876853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 25562185 - 25562150
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaa 80  Q
    |||||||||||||| |||||||||||||||||||||    
T  25562185 ctatattacagggggtaaagcaccattaacccttaa 25562150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 26101699 - 26101664
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaa 80  Q
    |||||||||||||| |||||||||||||||||||||    
T  26101699 ctatattacagggggtaaagcaccattaacccttaa 26101664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 7017101 - 7017067
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  7017101 ctatattacagggggtaaagcaccattaaccctta 7017067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 27967721 - 27967755
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaacc 75  Q
    |||||||||||||||||| ||||||||||||||||    
T  27967721 tgatctatattacaggggctaaagcaccattaacc 27967755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 33225473 - 33225439
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  33225473 ctatattacagggggtaaagcaccattaaccctta 33225439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 31826246 - 31826213
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  31826246 ctatattacagggggtaaagcaccattaaccctt 31826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 229581 - 229546
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    ||||||||||||||| |||||||||||||||||||||    
T  229581 ctatattacaggggt-aaagcaccattaacccttaaa 229546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 41708859 - 41708823
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||| ||||||||||||||||||||||    
T  41708859 ctatattacagggggtaaagcaccattaacccttaaa 41708823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 21692631 - 21692666
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaa 80  Q
    |||||||||||||| |||||||||||||||||||||    
T  21692631 ctatattacagggggtaaagcaccattaacccttaa 21692666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 39301912 - 39301879
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  39301912 ctatattacaggggataaagcaccattaaccctt 39301879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 43383016 - 43383049
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  43383016 ctatattacagggggtaaagcaccattaaccctt 43383049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 22686774 - 22686742
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  22686774 ctatattacagggggtaaagcaccattaaccct 22686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 23564133 - 23564101
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  23564133 ctatattacagggggtaaagcaccattaaccct 23564101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 45530533 - 45530501
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  45530533 ctatattacagggggtaaagcaccattaaccct 45530501  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 1263820 - 1263780
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  1263820 tgatctatattacagggggtaaagcaccattaacccataaa 1263780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 21852798 - 21852764
Alignment:
Q  43 atctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  21852798 atctatattacagggggtaaagcaccattaaccct 21852764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 44412558 - 44412592
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  44412558 ctatattacagggggtaaagcaccattaaccctta 44412592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 18655407 - 18655374
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  18655407 ctatattacagggggtaaagcaccattaaccctt 18655374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 28000144 - 28000177
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  28000144 ctatattacagggggtaaagcaccattaaccctt 28000177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 31417528 - 31417561
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  31417528 ctatattacagggggtaaagcaccattaaccctt 31417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 43596538 - 43596570
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  43596538 ctatattacagggggtaaagcaccattaaccct 43596570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 45639750 - 45639782
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  45639750 ctatattacagggggtaaagcaccattaaccct 45639782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 47973884 - 47973916
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  47973884 ctatattacaggggataaagcaccattaaccct 47973916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 5661896 - 5661932
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5661896 tgatctatattacagggggtaaagcaccattaaccct 5661932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 28593550 - 28593582
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||||||||||||||||||||||    
T  28593550 ctatattacaggggttaaagcaccattaaccct 28593582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 35936568 - 35936533
Alignment:
Q  46 tatattacaggggttaaagcaccattaacccttaaa 81  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35936568 tatattacagggggtaaagcaccattaacccttaaa 35936533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 2724515 - 2724481
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  2724515 ctatattacagggggtaaagcaccattaaccctta 2724481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 16920678 - 16920715
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  16920678 tgatctatattacagggggtaaagcactattaaccctt 16920715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 25963147 - 25963183
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||| |||||||| |||||||||||||    
T  25963147 ctatattacaggggataaagcactattaacccttaaa 25963183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 27433550 - 27433518
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctt 78  Q
    ||||||||||||| |||||||||||||||||||    
T  27433550 tatattacaggggataaagcaccattaaccctt 27433518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 37872534 - 37872566
Alignment:
Q  49 attacaggggttaaagcaccattaacccttaaa 81  Q
    ||||||||||||||| |||||||||||||||||    
T  37872534 attacaggggttaaaacaccattaacccttaaa 37872566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 26144189 - 26144153
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26144189 ctatattacagggggtaaagcaccattaacccttaaa 26144153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 46360919 - 46360955
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46360919 ctatattacagggggtaaagcaccattaacccttaaa 46360955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 26144369 - 26144404
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaaccc 76  Q
    |||||||||||||||||| |||||||||||||||||    
T  26144369 tgatctatattacagggggtaaagcaccattaaccc 26144404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 27449898 - 27449860
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  27449898 tgatctatattacagggggtaaagcaccattagccctta 27449860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 36405879 - 36405913
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  36405879 ctatattacagggggtaaagcaccattaaccctta 36405913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 1952766 - 1952733
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  1952766 ctatattacagggggtaaagcaccattaaccctt 1952733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 35370414 - 35370447
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  35370414 ctatattacagggggtaaagcaccattaaccctt 35370447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 35904646 - 35904613
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctta 79  Q
    ||||||||||||| ||||||||||||||||||||    
T  35904646 tatattacagggggtaaagcaccattaaccctta 35904613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 47858455 - 47858488
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  47858455 ctatattacagggggtaaagcaccattaaccctt 47858488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 54097131 - 54097098
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  54097131 ctatattacagggggtaaagcaccattaaccctt 54097098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 3475517 - 3475485
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  3475517 ctatattacagggggtaaagcaccattaaccct 3475485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 7086092 - 7086128
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||| |||| |||||||||||||||||    
T  7086092 ctatattacagggggtaaaacaccattaacccttaaa 7086128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 12144576 - 12144544
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  12144576 ctatattacagggggtaaagcaccattaaccct 12144544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 12878706 - 12878674
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  12878706 ctatattacagggggtaaagcaccattaaccct 12878674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 13033152 - 13033184
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  13033152 ctatattacagggggtaaagcaccattaaccct 13033184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 33294972 - 33294940
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  33294972 ctatattacagggggtaaagcaccattaaccct 33294940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 36405690 - 36405658
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  36405690 ctatattacagggggtaaagcaccattaaccct 36405658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 24951935 - 24951903
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||||||||||||||||||||||    
T  24951935 ctatattacaggggttaaagcaccattaaccct 24951903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 1366790 - 1366824
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaacc 75  Q
    |||||||||||||||||| ||||||||||||||||    
T  1366790 tgatctatattacagggggtaaagcaccattaacc 1366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 7327799 - 7327766
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  7327799 ctatattacagggggtaaagcaccattaaccctt 7327766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 28739439 - 28739406
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  28739439 ctatattacagggggtaaagcaccattaaccctt 28739406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 32845488 - 32845455
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  32845488 ctatattacagggggtaaagcaccattaaccctt 32845455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 8214585 - 8214617
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  8214585 ctatattacagggggtaaagcaccattaaccct 8214617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 14793481 - 14793513
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  14793481 ctatattacagggggtaaagcaccattaaccct 14793513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 23834493 - 23834525
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctt 78  Q
    ||||||||||||| |||||||||||||||||||    
T  23834493 tatattacagggggtaaagcaccattaaccctt 23834525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 24952081 - 24952113
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  24952081 ctatattacagggggtaaagcaccattaaccct 24952113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 32845688 - 32845720
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  32845688 ctatattacagggggtaaagcaccattaaccct 32845720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 33441536 - 33441504
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  33441536 ctatattacagggggtaaagcaccattaaccct 33441504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 36944256 - 36944288
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  36944256 ctatattacagggggtaaagcaccattaaccct 36944288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 43766507 - 43766539
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  43766507 ctatattacagggggtaaagcaccattaaccct 43766539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 39657308 - 39657272
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39657308 tgatctatattacagggggtaaagcaccattaaccct 39657272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 13295865 - 13295832
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctta 79  Q
    ||||||||||||| ||||||||||||||||||||    
T  13295865 tatattacagggggtaaagcaccattaaccctta 13295832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 26486795 - 26486828
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  26486795 ctatattacagggggtaaagcaccattaaccctt 26486828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 52413152 - 52413119
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  52413152 ctatattacagggggtaaagcaccattaaccctt 52413119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 16555356 - 16555324
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  16555356 ctatattacagggggtaaagcaccattaaccct 16555324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 24004115 - 24004083
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctt 78  Q
    ||||||||||||| |||||||||||||||||||    
T  24004115 tatattacagggggtaaagcaccattaaccctt 24004083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 39160558 - 39160594
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaaa 81  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  39160558 ctatattacagggggtaaagcaccattaacccataaa 39160594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 16876172 - 16876137
Alignment:
Q  46 tatattacaggggttaaagcaccattaacccttaaa 81  Q
    ||||||||||||| ||||||||||||||||||||||    
T  16876172 tatattacagggggtaaagcaccattaacccttaaa 16876137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 35434098 - 35434133
Alignment:
Q  45 ctatattacaggggttaaagcaccattaacccttaa 80  Q
    |||||||||||||| |||||||||||||||||||||    
T  35434098 ctatattacagggggtaaagcaccattaacccttaa 35434133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 51688046 - 51688011
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaaccc 76  Q
    |||||||||||||||||| |||||||||||||||||    
T  51688046 tgatctatattacagggggtaaagcaccattaaccc 51688011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 9161284 - 9161250
Alignment:
Q  41 tgatctatattacaggggttaaagcaccattaacc 75  Q
    |||||||||||||||||| ||||||||||||||||    
T  9161284 tgatctatattacaggggataaagcaccattaacc 9161250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 54012614 - 54012648
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  54012614 ctatattacagggggtaaagcaccattaaccctta 54012648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 9559065 - 9559032
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctta 79  Q
    ||||||||||||| ||||||||||||||||||||    
T  9559065 tatattacagggggtaaagcaccattaaccctta 9559032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 17261056 - 17261023
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  17261056 ctatattacagggggtaaagcaccattaaccctt 17261023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 31341257 - 31341224
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  31341257 ctatattacaggggataaagcaccattaaccctt 31341224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 41301305 - 41301338
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctta 79  Q
    ||||||||||||| ||||||||||||||||||||    
T  41301305 tatattacagggggtaaagcaccattaaccctta 41301338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 55090269 - 55090302
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctt 78  Q
    |||||||||||||| |||||||||||||||||||    
T  55090269 ctatattacagggggtaaagcaccattaaccctt 55090302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 1351493 - 1351525
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  1351493 ctatattacagggggtaaagcaccattaaccct 1351525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 11761113 - 11761081
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  11761113 ctatattacagggggtaaagcaccattaaccct 11761081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 29853437 - 29853405
Alignment:
Q  46 tatattacaggggttaaagcaccattaaccctt 78  Q
    ||||||||||||| |||||||||||||||||||    
T  29853437 tatattacagggggtaaagcaccattaaccctt 29853405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 29853653 - 29853685
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  29853653 ctatattacagggggtaaagcaccattaaccct 29853685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 33898298 - 33898330
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  33898298 ctatattacagggggtaaagcaccattaaccct 33898330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 35359503 - 35359471
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  35359503 ctatattacagggggtaaagcaccattaaccct 35359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 39846606 - 39846638
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  39846606 ctatattacagggggtaaagcaccattaaccct 39846638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 46994117 - 46994149
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  46994117 ctatattacagggggtaaagcaccattaaccct 46994149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 48418685 - 48418653
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  48418685 ctatattacagggggtaaagcaccattaaccct 48418653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 14473 - 14507
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccctta 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  14473 ctatattacagggggtaaagcaccattaaccctta 14507  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 29903 - 29935
Alignment:
Q  45 ctatattacaggggttaaagcaccattaaccct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  29903 ctatattacagggggtaaagcaccattaaccct 29935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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