View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_242 (Length: 244)
Name: NF11309A_low_242
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_242 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 33104705 - 33104506
Alignment:
| Q |
24 |
tggacatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacct |
123 |
Q |
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| T |
33104705 |
tggaaatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacct |
33104606 |
T |
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| Q |
124 |
gtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaacaa |
223 |
Q |
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| T |
33104605 |
gtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaacaa |
33104506 |
T |
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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 10835806 - 10835967
Alignment:
| Q |
46 |
acctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacctgtaagaaatcgaacagccattg |
145 |
Q |
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| T |
10835806 |
acctgaacaatagctacatgtaggagggtcccacggaggccaacggcgatagaagctgctgccataactgctggaccagtaaggaatcttatagccatgg |
10835905 |
T |
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| Q |
146 |
caaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacct |
207 |
Q |
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| T |
10835906 |
caaatgaagcaacagaattcccacatgcaatgatcttgggttgaagagccataaacagacct |
10835967 |
T |
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