View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_243 (Length: 244)
Name: NF11309A_low_243
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_243 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 39182551 - 39182325
Alignment:
| Q |
11 |
atcgcggcaaaaatcttggaggttagactccacaagacttttgagttcttataggtttcaattctttgatttcctagtagatgaaatagcaatgacttac |
110 |
Q |
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| T |
39182551 |
atcgcggcaaaaatcttggaggttagacttcacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaa-gacttac |
39182453 |
T |
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| Q |
111 |
agccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatattttcttttcttttcttgcagcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
39182452 |
agccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatatttttttttttttttttgcagcc |
39182353 |
T |
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| Q |
211 |
ggcgaagttgaatattactactgatctg |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39182352 |
ggcgaagttgaatattactactgatctg |
39182325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 2103088 - 2103243
Alignment:
| Q |
11 |
atcgcggcaaaaatcttggaggttagactccacaagactttt--gagttcttataggtttcaattctttgatttcctagtagatgaaatagcaatgactt |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2103088 |
atcgtggcaaaaatcttggaggttagacttcacaagacttttctgagttcttattggtttcaattctttgatttcctagtagatgaaatagcaatgactt |
2103187 |
T |
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| Q |
109 |
acagccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggata |
164 |
Q |
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| T |
2103188 |
acagccaaagttgctttaaaaaaacatctttcacttgtgtttggttgcaatggata |
2103243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 2103302 - 2103370
Alignment:
| Q |
164 |
acacaagttttaatgcatcctatattttcttttcttttcttgcagccggcgaagttgaatattactactgat |
235 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2103302 |
acacaagttttaatgcattctatatttt-ttttctttt--tgcagccggcgaagttgaatattactactgat |
2103370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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