View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_244 (Length: 243)

Name: NF11309A_low_244
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_244
NF11309A_low_244
[»] chr3 (4 HSPs)
chr3 (11-225)||(11343668-11343887)
chr3 (120-214)||(6162663-6162760)
chr3 (122-167)||(50663926-50663970)
chr3 (174-214)||(3860246-3860286)
[»] chr1 (1 HSPs)
chr1 (76-156)||(17696231-17696311)
[»] chr4 (3 HSPs)
chr4 (13-151)||(38677532-38677674)
chr4 (89-149)||(9765399-9765459)
chr4 (126-214)||(33164492-33164583)
[»] chr2 (3 HSPs)
chr2 (76-171)||(11573680-11573774)
chr2 (172-216)||(20685004-20685048)
chr2 (125-214)||(37892994-37893086)
[»] chr7 (2 HSPs)
chr7 (76-151)||(13552777-13552852)
chr7 (80-148)||(5729048-5729116)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 11343668 - 11343887
Alignment:
Q  11 agaagaagaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaatgctgcatgagt-aactcacgctgcgtgacttaagttacgctaaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  11343668 agaagaagaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaatgctgcgtgagttaactcacgctgcgtgacttaagttacgctaaca 11343767  T
Q  110 ttataactgacatgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataatta 205  Q
    |||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||    ||||||||| |||||||||||||| | ||||| |    
T  11343768 ttataactggtatgagttaagtcacgctacctgagttaacatgcgtatggggcatttttgacttttactttgagagtgagcggaaccatttgaataatga 11343867  T
Q  206 acagaattcttgtgatattt 225  Q
     |||||||||||||||||||    
T  11343868 gcagaattcttgtgatattt 11343887  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 6162663 - 6162760
Alignment:
Q  120 catgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattc 214  Q
    ||||| |||||||||||||||   |||||||| |||| |||||||||| |||    |||||| ||||||||||||||||| || |||| | ||||||||    
T  6162663 catgacttaagtcacgctacgcatgttaacatgcgta-ggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 50663970 - 50663926
Alignment:
Q  122 tgagttaagtcacgctacgtgagttaacatacgtatggggcatttt 167  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||    
T  50663970 tgagttaactcacgctacgtgagttaacatgcgta-ggggcatttt 50663926  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 3860286 - 3860246
Alignment:
Q  174 tttgagaatgagcggaaccattgggataattaacagaattc 214  Q
    |||||||||||||| ||||||| ||||||| ||||||||||    
T  3860286 tttgagaatgagcgaaaccatttggataatgaacagaattc 3860246  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 17696311 - 17696231
Alignment:
Q  76 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacatacgta 156  Q
    ||||||||| ||| |||||||||| ||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17696311 taactcacgttgcatgacttaagtcacgctactcttataactgacatgagttaactcacgctacgtgagttaacatgcgta 17696231  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 38677532 - 38677674
Alignment:
Q  13 aagaagaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaat---gct-gcatgag-taactcacgctgcgtgacttaagttacgctaa 107  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||||||||||    ||  | |||| ||||||||| |||||||||||||| || ||||    
T  38677532 aagaagaagaataggtgtagttgttggtagctgatggtaaaaagaagagaaatctaactaacgtgagttaactcacgttgcgtgacttaagtcacactaa 38677631  T
Q  108 cattataactgacatgagttaagtcacgctacgtgagttaacat 151  Q
    ||| || |||| | |||| ||| ||||||||||| |||||||||    
T  38677632 catcat-actggcgtgagataattcacgctacgtaagttaacat 38677674  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 9765459 - 9765399
Alignment:
Q  89 gtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaac 149  Q
    |||| |||||| |||||||||| ||||||||||| |||||| |||||||| |||| |||||    
T  9765459 gtgatttaagtcacgctaacatcataactgacataagttaactcacgctatgtgacttaac 9765399  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 33164492 - 33164583
Alignment:
Q  126 ttaagtcacgctacgtgagttaacatacgtatggggcatttttgaca----ctttgagaatgagcggaaccattgggataattaacagaattc 214  Q
    |||||||||||||||   |||||||| |||| |||||||||| ||||    ||||||||||||||||||||||| || |||| | ||||||||    
T  33164492 ttaagtcacgctacgcatgttaacatgcgta-ggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 11573774 - 11573680
Alignment:
Q  76 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac 171  Q
    |||||||||||||||||||||||||||| |  | ||||||||  ||   ||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  11573774 taactcacgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgctacgcaagttaacatacgta-ggggcatttttgac 11573680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 20685048 - 20685004
Alignment:
Q  172 actttgagaatgagcggaaccattgggataattaacagaattctt 216  Q
    |||||||||||||||||||||||| || |||| | ||||||||||    
T  20685048 actttgagaatgagcggaaccatttgggtaatgagcagaattctt 20685004  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 37892994 - 37893086
Alignment:
Q  125 gttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattc 214  Q
    ||||| ||||||||||| ||||||||| | || |||||||||| |||    |||||| ||||||||| ||||||| || |||||| ||||||||    
T  37892994 gttaactcacgctacgtaagttaacatgcata-ggggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 13552852 - 13552777
Alignment:
Q  76 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacat 151  Q
    |||||||||||||||||||||||| ||  |||||| |||| ||   |||||||| ||| |||||||||||||||||    
T  13552852 taactcacgctgcgtgacttaagtcacattaacatcataattggtgtgagttaactcaagctacgtgagttaacat 13552777  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 5729048 - 5729116
Alignment:
Q  80 tcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaa 148  Q
    |||||||||||||||||||| ||| |    |||||||||| ||||||||| ||||| ||||||| ||||    
T  5729048 tcacgctgcgtgacttaagtcacgtttctcttataactgatatgagttaactcacgttacgtgaattaa 5729116  T

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