View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_249 (Length: 243)
Name: NF11309A_low_249
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_249 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 14573 - 14783
Alignment:
| Q |
20 |
ataacacctaatagaagaatatggaacgtgctgcgtatgggtggagactcaaagctgattaagaaaattttatgtcccagtgtcgtggtaagattgattt |
119 |
Q |
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| T |
14573 |
ataacacctaatagaagaatatggaacgtgctgcatatgggtggagagtcaaagctgattaagaaaattttatgtcccagtgttgtggtaagattgattt |
14672 |
T |
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| Q |
120 |
gaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattgttgattgtttgttttagttatttatagca |
219 |
Q |
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| T |
14673 |
gaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattgttgattgtttgttttagttatttatagca |
14772 |
T |
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| Q |
220 |
ctattgtagaa |
230 |
Q |
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| T |
14773 |
ctattgtagaa |
14783 |
T |
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