View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_252 (Length: 243)

Name: NF11309A_low_252
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_252
NF11309A_low_252
[»] chr7 (8 HSPs)
chr7 (37-233)||(26617737-26617933)
chr7 (88-228)||(39865471-39865611)
chr7 (37-228)||(33190303-33190494)
chr7 (37-164)||(14719370-14719501)
chr7 (37-188)||(7578536-7578687)
chr7 (139-220)||(14719287-14719367)
chr7 (140-201)||(37479556-37479617)
chr7 (37-155)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (37-221)||(52311220-52311404)
chr4 (61-228)||(54687660-54687826)
chr4 (67-212)||(20275938-20276082)
chr4 (37-197)||(5350929-5351089)
chr4 (67-228)||(26997226-26997387)
chr4 (61-228)||(54678540-54678709)
chr4 (40-225)||(17365674-17365858)
chr4 (67-228)||(26992029-26992193)
chr4 (137-228)||(6408036-6408126)
chr4 (138-224)||(22746635-22746721)
chr4 (37-199)||(27360193-27360354)
chr4 (37-228)||(12746524-12746715)
chr4 (175-228)||(14000179-14000230)
chr4 (40-162)||(18902113-18902234)
chr4 (175-226)||(13994875-13994924)
chr4 (107-163)||(20355099-20355155)
[»] chr5 (8 HSPs)
chr5 (37-228)||(16633256-16633446)
chr5 (67-228)||(19779955-19780116)
chr5 (67-221)||(19479453-19479607)
chr5 (37-164)||(17604690-17604821)
chr5 (67-228)||(19783203-19783363)
chr5 (139-201)||(17604824-17604886)
chr5 (37-80)||(21575046-21575089)
chr5 (37-129)||(35105030-35105122)
[»] chr1 (6 HSPs)
chr1 (60-233)||(40274356-40274530)
chr1 (67-228)||(40279150-40279311)
chr1 (58-228)||(29530120-29530291)
chr1 (58-222)||(29547775-29547940)
chr1 (38-201)||(28201654-28201817)
chr1 (106-188)||(27417427-27417509)
[»] chr3 (7 HSPs)
chr3 (115-229)||(8832532-8832646)
chr3 (103-228)||(39875817-39875940)
chr3 (116-228)||(44126711-44126823)
chr3 (37-159)||(21587185-21587306)
chr3 (177-228)||(13921708-13921757)
chr3 (37-153)||(20458819-20458933)
chr3 (37-110)||(20463226-20463299)
[»] chr2 (3 HSPs)
chr2 (37-201)||(19912279-19912443)
chr2 (37-114)||(34111054-34111131)
chr2 (41-163)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (138-224)||(17909890-17909977)
chr8 (170-216)||(10739137-10739183)
chr8 (170-224)||(15007178-15007231)
chr8 (174-228)||(36911929-36911983)
chr8 (137-218)||(10734068-10734149)
chr8 (90-214)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (177-228)||(23599935-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (175-228)||(16258-16311)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 26617933 - 26617737
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617933 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 26617834  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctctgat 233  Q
    |||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  26617833 ttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctcttctttgat 26617737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 39865471 - 39865611
Alignment:
Q  88 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 187  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||  |||||||||||  ||||    
T  39865471 agtgaatagttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaa 39865570  T
Q  188 gagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  39865571 gagaataatacaaagtgctttcatcttctccttcctcttct 39865611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 33190494 - 33190303
Alignment:
Q  37 ttagtggatttccatcctta-gtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcat 135  Q
    ||||||||| | |||||||| ||||||||| |||||||||   |||||  | |||||||||||| ||||||||| ||  |||||||||||||||| ||||    
T  33190494 ttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcat 33190395  T
Q  136 cttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    |||||||  ||||| |||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33190394 cttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttct 33190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 14719501 - 14719370
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 132  Q
    ||||||||| ||| ||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 14719402  T
Q  133 catcttgtgtcctataaataggactcatattg 164  Q
    ||| |||| || ||||||||||||||||||||    
T  14719401 cattttgtatcttataaataggactcatattg 14719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 7578536 - 7578687
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| ||||||||||||||| ||| |||| ||||  ||||| | ||| || || || ||||| |||||||||  ||||||| ||||||  | ||     
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 188  Q
    |||| ||||||||||||||||||||||  | | |||||||||||||| ||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaag 7578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 14719367 - 14719287
Alignment:
Q  139 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttctt 220  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa-agctttcatcttcttctt 14719287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 37479617 - 37479556
Alignment:
Q  140 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 201  Q
    |||||||||||||||||  |||||| | | |||||| ||| |||||||||||||||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaa 37479556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 35339141 - 35339023
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| |||||| |||||||| ||| |||||||||| ||||| | ||| || || |||| ||| |||||||||  |||||   |||| |  ||||     
T  35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcata 35339042  T
Q  137 ttgtgtcctataaatagga 155  Q
    |||| ||||||||||||||    
T  35339041 ttgtatcctataaatagga 35339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 52311404 - 52311220
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    |||||| || ||||||| ||||||| ||| ||||||||||||| |||  |||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  52311404 ttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatc 52311305  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 221  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttc 52311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 54687826 - 54687660
Alignment:
Q  61 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcat 160  Q
    ||||||||||||||||||| |||| | |||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||    
T  54687826 ttcactttcctataacccc-attagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcat 54687728  T
Q  161 attgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  54687727 attgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttcctcttct 54687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 67 - 212
Target Start/End: Original strand, 20275938 - 20276082
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    ||||||||||  |||||| | ||||||||||||||||||||||| |  |||||||||||||||| ||||||| ||| ||||||||||||||||||||| |    
T  20275938 ttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgta 20276037  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatc 212  Q
    || ||||||||||| |||||| |||||||||||||| |||||||||    
T  20276038 ttgtaaagacacacatgtgaacagaataatacaaag-gctttcatc 20276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 5350929 - 5351089
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| ||||||||||||||| ||| ||||||||| | ||||||  |||||||||||||| ||||||||||||| |||||| | |||||| ||||     
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataatctccattagcgagtgaatagttagcggaccttaattattttgatcgc-cacttactcatt 5351027  T
Q  137 ttgtgtcctataaataggactcatattgaatt-ctaaagacacacttgtgaagagaataata 197  Q
    |||||||||||||||||||||||||||  |||   ||||||||||||||||| |||||||||    
T  5351028 ttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataata 5351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 26997226 - 26997387
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||||||||| | ||||| | |||||||||| |||| ||||||||    |||| |||| ||||| ||||||||||| ||||||||||||||||||||  |    
T  26997226 ttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattata 26997325  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26997326 ttgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttct 26997387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 54678709 - 54678540
Alignment:
Q  61 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttattcatcttgtgtcctataaataggactc 158  Q
    ||||| |||||||||||||| ||| | ||||||||||| |||||||||||||   |||||||| |  ||||| |||||||||||  ||||||||||||||    
T  54678709 ttcaccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactc 54678610  T
Q  159 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    |||||  ||| |||||| ||  ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  54678609 atattatattgtaaagatacgtttgtgaagagaataataaaaagtgttttcatcttctccttcctcttct 54678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 17365674 - 17365858
Alignment:
Q  40 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 139  Q
    |||||| | ||||||||||||| || |||| |||||||  ||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  17365674 gtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttg 17365773  T
Q  140 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctct 225  Q
    ||||||||||||| | ||| ||||  | | |||||| ||  ||||||| | ||||||||||| || ||||| | ||||||||||||    
T  17365774 tgtcctataaataaggctc-tattatagtgtaaagaaacctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctct 17365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 26992029 - 26992193
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||||||||  | ||||| | |||||||||||||||||||||||||  |||||||||| |||||||||||  |||| ||||||||||| ||||||||  |    
T  26992029 ttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatattata 26992128  T
Q  167 ttctaaagacacacttgtgaagag---aataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||  ||||| | ||||||||||||   ||||||||||||| ||||||||||||  ||||||||||    
T  26992129 ttgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttct 26992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 6408036 - 6408126
Alignment:
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||||||||||||||||||||  |||||| |   ||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  6408036 ttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataatacaaaat-ctttcatcttcttcttcttcttct 6408126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 22746635 - 22746721
Alignment:
Q  138 tgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 224  Q
    |||||||||||||||||||  | |||  | | ||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  22746635 tgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaagtactttcatcttcttcctcctc 22746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 27360193 - 27360354
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| | ||||  ||||||| ||| |||||||||| || || ||||| |  || |||||||| |||||||||  ||||||| |||||| |||||     
T  27360193 ttagtggatgttcatcagtagtcttccaccttcctataactcc-ataaatgaatagatggttagtggtccttaattactttgatcattcacttgttcata 27360291  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataataca 199  Q
    |||| ||||||||||||||||  ||||  | | ||||||||| |||||||| | |||||||||    
T  27360292 ttgtatcctataaataggacttgtattatagtgtaaagacacgcttgtgaaaaaaataataca 27360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 12746715 - 12746524
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| |||||||| | |||| ||| ||||||||||| | |||| ||| || ||| ||| ||| ||||||| |  ||||||| ||||||  ||||     
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcat- 12746617  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||| ||||||||||||| ||  |||||  | | | || ||||||||| |||| ||||||||||||  | |||||||||||||| |||||||||    
T  12746616 ttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttcttcctcctcttct 12746524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 14000179 - 14000230
Alignment:
Q  175 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  14000179 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 14000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 18902234 - 18902113
Alignment:
Q  40 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 139  Q
    |||||| | |||||||| |||||||| ||||||||||| |||||| ||| || ||  ||| ||| |||||||| | ||||||  ||||||  |||| |||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcat-ttg 18902136  T
Q  140 tgtcctataaataggactcatat 162  Q
    ||||||||||||  |||||||||    
T  18902135 tgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 13994875 - 13994924
Alignment:
Q  175 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctctt 226  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  13994875 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctctt 13994924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 20355155 - 20355099
Alignment:
Q  107 ttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 163  Q
    |||||||  ||||||| ||| || ||||| |||| ||||||||||||||||||||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatatt 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 16633446 - 16633256
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||  ||||||| ||||||| ||| |    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaac 16633348  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||||||||||||||||| |||  | ||||||| || ||||| ||||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatcatcatcttcttcttct 16633256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 19780116 - 19779955
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| ||||||||| |    
T  19780116 ttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgta 19780017  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||  |||||||||||  ||||||||||||||||||||||||| |||||||  ||||||||||    
T  19780016 ttacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttct 19779955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 19479607 - 19479453
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||||| || |||||| |    
T  19479607 ttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttatattgta 19479508  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 221  Q
    || ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  19479507 ttgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 17604690 - 17604821
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 132  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 17604789  T
Q  133 catcttgtgtcctataaataggactcatattg 164  Q
    ||| |||| || ||||||||||||||||||||    
T  17604790 cattttgtatcttataaataggactcatattg 17604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 19783363 - 19783203
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||||||||| | ||||| | ||||||||||||||||| |||||||   || |||||||||||| ||||||||||| ||||||||||  ||||||||| |    
T  19783363 ttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta 19783264  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    | | |||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||||    
T  19783263 tgc-aaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttct 19783203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 17604824 - 17604886
Alignment:
Q  139 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 201  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa 17604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 21575089 - 21575046
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataaccccc 80  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  21575089 ttagtggatgtccatccttagtcttccaccttcctataaccccc 21575046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcactt 129  Q
    ||||||||| ||||||||||||||| ||| || | ||||| ||||| | ||| || || |||||||  |||||||||  ||||||| ||||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 40274530 - 40274356
Alignment:
Q  60 tttcactttcctataacccccattaatgagtgaa-tagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactc 158  Q
    |||||| ||| |||||| ||||||| | |||||| |||||||||||| ||||||  |||||||||||||||| |||||||||||  |||||||||| ||     
T  40274530 tttcaccttcttataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggcta 40274431  T
Q  159 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctctgat 233  Q
    |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  40274430 atattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttctttgat 40274356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 40279311 - 40279150
Alignment:
Q  67 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||  |||||||| |    
T  40279311 ttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgta 40279212  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||  ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  40279211 ttgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctttctcttct 40279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 29530120 - 29530291
Alignment:
Q  58 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 157  Q
    |||| ||||||||| ||| |||||| | | | || || |||||||| ||||||||   ||||||| ||||||  |||| ||||||| ||||||||||||     
T  29530120 tcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcat-ttgtgtcatataaataggacc 29530218  T
Q  158 catattgaattctaaaga-cacacttgtgaag-agaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
     |||||| | | |||||| ||||||||  ||  |||||||||||||||| |||||||| ||||||||||||||    
T  29530219 tatattgtaatgtaaagaacacacttgaaaaatagaataatacaaagtgttttcatctccttcttcctcttct 29530291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 29547775 - 29547940
Alignment:
Q  58 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 157  Q
    |||| ||| ||||||||| |||||||| | | || || |||||||| ||||||||   ||||||| ||||||  |||| || |||||||||||||||||     
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggacc 29547873  T
Q  158 catattgaattctaaaga-cacacttgtgaa-gagaataatacaaagtgctttcatcttcttcttcc 222  Q
     |||||| | | |||||| ||||||||  || |||||||||||||| |  |||||||||||||||||    
T  29547874 tatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaatattttcatcttcttcttcc 29547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 28201817 - 28201654
Alignment:
Q  38 tagtggatttccatccttagtctttcactttcctataaccc-ccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    |||||||| |||||||||  |||| ||| |||||||||||| |||||| ||| || || |||||| | | ||||||   ||||| | |||||| |||||     
T  28201817 tagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcat- 28201719  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 201  Q
    || ||||||||||||| ||||||||||  | | |||   ||||||||| ||||||||| ||||||    
T  28201718 ttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaagagaatagtacaaa 28201654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 27417509 - 27417427
Alignment:
Q  106 cttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 188  Q
    ||||||||  ||||||| ||||||| |||| |||| || |||||||||||||| ||||  | | |||||||||||||| ||||    
T  27417509 cttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttgagaag 27417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 8832646 - 8832532
Alignment:
Q  115 cttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatctt 214  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| |||  ||||||||| |  ||||||||||||||||||||| ||||||| |    
T  8832646 cttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcct 8832547  T
Q  215 cttcttcctcttctc 229  Q
    || ||||||||||||    
T  8832546 ctccttcctcttctc 8832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 39875817 - 39875940
Alignment:
Q  103 gaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaag 202  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||| ||||| |||  |||||||||||||||||||||  ||||||||     
T  39875817 gaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagaga--aatacaaat 39875914  T
Q  203 tgctttcatcttcttcttcctcttct 228  Q
    | |||||||||||||| |||| ||||    
T  39875915 tactttcatcttcttcctccttttct 39875940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 44126823 - 44126711
Alignment:
Q  116 ttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatctt 214  Q
    ||||||| ||||||  |||| ||||||||||||||||||||  |||||| | | | || |||||||||||||||||||||||||||||| ||||||||||    
T  44126823 ttgatcattcacttgctcat-ttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatctt 44126725  T
Q  215 cttcttcctcttct 228  Q
    |||||| |||||||    
T  44126724 cttctttctcttct 44126711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 21587306 - 21587185
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||| | |||| ||||| |||| ||| |||||||||||||||||| |||  | || |||||||  |||||| |   ||||||| ||||||  ||||     
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcat- 21587208  T
Q  137 ttgtgtcctataaataggactca 159  Q
    |||||||||||||||||||||||    
T  21587207 ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 13921708 - 13921757
Alignment:
Q  177 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  13921708 acacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 13921757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 20458933 - 20458819
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| |||||||||| |||| ||| ||||||||| |||||||| ||| ||  | ||||||| ||||||| | | ||||||| ||||||  ||||     
T  20458933 ttagtggatgtccatccttaatcttccaccttcctataa-ccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcat- 20458836  T
Q  137 ttgtgtcctataaatag 153  Q
    ||||| |||||||||||    
T  20458835 ttgtgacctataaatag 20458819  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 20463299 - 20463226
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaa 110  Q
    ||||||||| ||||| ||||||||| | | ||||||||| ||| |||| ||| || || |||||||||||||||    
T  20463299 ttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaa 20463226  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 19912279 - 19912443
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||||| |||| ||| || || |||||| | ||||||||   ||||||||||||||  ||||     
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcat- 19912377  T
Q  137 ttgtgtcctataaataggactcatatt-gaattctaaagacacacttgtgaagagaataatacaaa 201  Q
    ||||||||||||||||||||  |||||  |||   ||| | |||||||||||||||||||||||||    
T  19912378 ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaa 19912443  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 34111131 - 34111054
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattat 114  Q
    ||||||||| |||||||||| || | ||| |||||||||| | ||||| |||||||||||||||||||||||||||||    
T  34111131 ttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaattat 34111054  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 45276354 - 45276475
Alignment:
Q  41 tggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgt 140  Q
    ||||| ||||||| |  |||| ||| ||||||||||||   ||| ||| || || |||||||| |||||||  | |||| || ||||||| |||| ||||    
T  45276354 tggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcat-ttgt 45276452  T
Q  141 gtcctataaataggactcatatt 163  Q
    |||||||||||||||||||||||    
T  45276453 gtcctataaataggactcatatt 45276475  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 17909890 - 17909977
Alignment:
Q  138 tgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 224  Q
    |||||||||||||||||||| ||||   | | |||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctc 17909977  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 10739137 - 10739183
Alignment:
Q  170 taaagacacacttgtgaagagaataatacaaagtgctttcatcttct 216  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  10739137 taaagatatacttgtgaagagaataatacaaagtgctttcatcttct 10739183  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 15007178 - 15007231
Alignment:
Q  170 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 224  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  15007178 taaagacacactggtgaagaga-taatacaaagtgctttcatcttctccttcctc 15007231  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 36911983 - 36911929
Alignment:
Q  174 gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    ||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||    
T  36911983 gacacacttctgaagagaataataaaaagtgttttcaccttcttcttcctcttct 36911929  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 10734068 - 10734149
Alignment:
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttc 218  Q
    |||| |||||||||||||||  | ||||   | |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  10734068 ttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttc 10734149  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 12145764 - 12145639
Alignment:
Q  90 tgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaa-taggactcatattgaattctaaagacacacttgtgaag 188  Q
    ||||||||||||||  ||||||||  ||||||||||||||  |||| |||||||||||||| || ||||||| |   | | |||| |||||||| |||||    
T  12145764 tgaatagttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaag 12145665  T
Q  189 agaataatacaaagtgctttcatctt 214  Q
    || |||||||| |  |||||||||||    
T  12145664 aggataatacacaaagctttcatctt 12145639  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 23599986 - 23599935
Alignment:
Q  177 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  23599986 acacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttct 23599935  T

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Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 16258 - 16311
Alignment:
Q  175 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 228  Q
    |||||| |||||||| |||||||||||||||||| || || |||||||||||||    
T  16258 acacacctgtgaagaaaataatacaaagtgcttttatatttttcttcctcttct 16311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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