View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_255 (Length: 242)
Name: NF11309A_low_255
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_255 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 20816529 - 20816291
Alignment:
| Q |
1 |
gcttagccaatccagggtcaacagcatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcc |
100 |
Q |
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| T |
20816529 |
gcttagccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcc |
20816430 |
T |
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| Q |
101 |
tccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816429 |
tccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtg |
20816330 |
T |
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| Q |
201 |
tccccccgaattgaaacttcattggatattcttcgacat |
239 |
Q |
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||||||||||||| |||||||||||||||| | |||||| |
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| T |
20816329 |
tccccccgaattgcaacttcattggatattttgcgacat |
20816291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38779616 - 38779821
Alignment:
| Q |
1 |
gcttagccaatccagggtcaacagcatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcc |
100 |
Q |
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||||||| |||||||| |||| | |||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
38779616 |
gcttagcaaatccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcc |
38779715 |
T |
|
| Q |
101 |
tccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| | |
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| T |
38779716 |
tccctccttaactggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctgg |
38779815 |
T |
|
| Q |
201 |
tccccc |
206 |
Q |
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|||||| |
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| T |
38779816 |
tccccc |
38779821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 33388583 - 33388771
Alignment:
| Q |
9 |
aatccagggtcaacagcatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctc |
108 |
Q |
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||||||||||||| | |||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
33388583 |
aatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctcct |
33388682 |
T |
|
| Q |
109 |
taactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
197 |
Q |
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|||||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388683 |
taactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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