View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_258 (Length: 242)
Name: NF11309A_low_258
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_258 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 25989538 - 25989742
Alignment:
| Q |
21 |
tcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctataga |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25989538 |
tcactgtgattgctcggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctataga |
25989637 |
T |
|
| Q |
121 |
gtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgatttt |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25989638 |
gtttaaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggctgttgatttt |
25989737 |
T |
|
| Q |
221 |
gatgt |
225 |
Q |
| |
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||||| |
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| T |
25989738 |
gatgt |
25989742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 25322183 - 25322389
Alignment:
| Q |
21 |
tcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctataga |
120 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || || |
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| T |
25322183 |
tcactgcgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacttttcttggaccgattga |
25322282 |
T |
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| Q |
121 |
gtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgatttt |
220 |
Q |
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|||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25322283 |
gtttaaaggaaatactaagatcaaacttggacgtcaacaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggctgttgatttt |
25322382 |
T |
|
| Q |
221 |
gatgtcc |
227 |
Q |
| |
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||||||| |
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| T |
25322383 |
gatgtcc |
25322389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 26151876 - 26152082
Alignment:
| Q |
21 |
tcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctataga |
120 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || || |
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| T |
26151876 |
tcactgcgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacttttcttggaccgattga |
26151975 |
T |
|
| Q |
121 |
gtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgatttt |
220 |
Q |
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|||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26151976 |
gtttaaaggaaatactaagatcaaacttggacgtcaacaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggctgttgatttt |
26152075 |
T |
|
| Q |
221 |
gatgtcc |
227 |
Q |
| |
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||||||| |
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|
| T |
26152076 |
gatgtcc |
26152082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 25324797 - 25324600
Alignment:
| Q |
28 |
gattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctatagagtttcaa |
127 |
Q |
| |
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|||| ||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| || |
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| T |
25324797 |
gatttcttggtacaaagataattattttggttatgtgagtttgacaccgtttgatcaaggacacaagaatacaacattttttggacctatagagtttaaa |
25324698 |
T |
|
| Q |
128 |
ggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgattttgatgt |
225 |
Q |
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|| ||||||| ||||||||| |||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
25324697 |
gggaatactaagatcaatctaggacgtaaacaacttgacgagtattttgaagagagaagtctcgggattcacaatgatttggctgttgattttgatgt |
25324600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 26154490 - 26154293
Alignment:
| Q |
28 |
gattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctatagagtttcaa |
127 |
Q |
| |
|
|||| ||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| || |
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| T |
26154490 |
gatttcttggtacaaagataattattttggttatgtgagtttgacaccgtttgatcaaggacacaagaatacaacattttttggacctatagagtttaaa |
26154391 |
T |
|
| Q |
128 |
ggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgattttgatgt |
225 |
Q |
| |
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|| ||||||| ||||||||| |||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
26154390 |
gggaatactaagatcaatctaggacgtaaacaacttgacgagtattttgaagagagaagtctcgggattcacaatgatttggctgttgattttgatgt |
26154293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 25434657 - 25434852
Alignment:
| Q |
28 |
gattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctatagagtttcaa |
127 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| || | | ||||||||| || |||||||||||||||||||| || ||||||| ||||||||| ||| || |
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| T |
25434657 |
gattgcttggtacaaagacaatgatttcagtcatataactttgacaccctttgatcaaggacacaagaataccacttttcttggacctatagaatttaaa |
25434756 |
T |
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| Q |
128 |
ggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgattttgat |
223 |
Q |
| |
|
|||||| || ||||| |||||||||||| ||||| ||||||||| |||||||| ||||||| ||||| | || ||||||| ||||||||||||| |
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|
| T |
25434757 |
ggaaatgctttcatcaaacttggacgtcaacaacttaacgagtattctgaagagacgcgtcttaggatttataaagatttggctgttgattttgat |
25434852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 25442565 - 25442760
Alignment:
| Q |
28 |
gattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctatagagtttcaa |
127 |
Q |
| |
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|||||| |||||||||||||||| ||| ||| || ||||||| | || || |||||||||||||||||||| || ||||||| |||| |||| ||| || |
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| T |
25442565 |
gattgcctggtacaaagacaatgatttcagtcgtgcgagtttgtctccctttgatcaaggacacaagaataccacttttcttggacctgtagaatttaaa |
25442664 |
T |
|
| Q |
128 |
ggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgattttgat |
223 |
Q |
| |
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|||||| ||| ||||| |||||||||||| ||||| ||||||||| |||||||| ||||||||||||| | || ||||||| ||||||||||||| |
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| T |
25442665 |
ggaaatgctaccatcaaacttggacgtcaacaacttaacgagtattctgaagagacgcgtcttgggatttataacgatttggctgttgattttgat |
25442760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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