View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_26 (Length: 432)
Name: NF11309A_low_26
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 4725685 - 4725984
Alignment:
| Q |
11 |
tgacatggaactaaatttaagttgcaaccttatttgatgagannnnnnnnngcaacatttcatatttcccagttcccaccttatgatatactagtagact |
110 |
Q |
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| T |
4725685 |
tgacatggaactaaatttaagttgcaacattatttgatgagatttttttt-gcaacatttcatatttcccagttcccaccttatgatata---gtagact |
4725780 |
T |
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| Q |
111 |
aatgtttagccagatgcttggcgtgacaatttttnnnnnnngtgattaagtaannnnnnnnnn-gagcgatgagtttaagtaattaataatttgatattc |
209 |
Q |
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| T |
4725781 |
aatgtttagccagatgcttggcgtgacaatttttaaaaaaagtgattaagtactttttttttttgagagaagagattaagtaattaataatttgattttc |
4725880 |
T |
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| Q |
210 |
aagattttgagtcacatacacaacaattatatatgaatttcnnnnnnnatgtaaatcatatatcaatctgcgcaacttagatactaacaagaagtaactt |
309 |
Q |
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| T |
4725881 |
aagattttgagtcacatacacaacaattatatatgaatttctttttttatgtaaatcatatatcaatctgcgcaacttagatactaacaagaagtaactt |
4725980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 4726005 - 4726144
Alignment:
| Q |
295 |
aacaagaagtaacttagatttatt-tannnnnnngacaaagaagtaacttagatctatttcaaagattgatatttcttcacaattattttttcatacgca |
393 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4726005 |
aacaagaagtaacttagatttattgtatttttttgacaaagaagtaacttagatctatttcaaagatcgatatttcttcacaattattttttcatacgca |
4726104 |
T |
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| Q |
394 |
tcaactccaaacaaaatatg-aaatacatgaataaaattt |
432 |
Q |
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| T |
4726105 |
tcaacttcaaacaaaatatgaaaatatatgaataaaattt |
4726144 |
T |
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