View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_262 (Length: 241)
Name: NF11309A_low_262
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_262 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 12422946 - 12423144
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12422946 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
12423045 |
T |
|
| Q |
128 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacacca |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
12423046 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgtttctggcaccacca |
12423144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 8719361 - 8719559
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8719361 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
8719460 |
T |
|
| Q |
128 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacacca |
226 |
Q |
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| T |
8719461 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgtttctggcaccacca |
8719559 |
T |
|
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Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 38460345 - 38460543
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38460345 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
38460444 |
T |
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| Q |
128 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacacca |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||| |
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| T |
38460445 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagtttctggcaccacca |
38460543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 38459811 - 38459613
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38459811 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcgtgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
38459712 |
T |
|
| Q |
128 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacacca |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||| |
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| T |
38459711 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagtttctggcaccacca |
38459613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 30626873 - 30626675
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
30626873 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatctt |
30626774 |
T |
|
| Q |
128 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacacca |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
30626773 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaaatttcaaggaggatgatcttgttgatgtttctggcaccacca |
30626675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 34149794 - 34149913
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| || |||||||||||| || |||||||||| | ||||||||||||||||||||| |
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| T |
34149794 |
cctcttctcaatttgtgtaattgcaaaatgaaagaaa-aagaaaaagagaatca---------tggtgatggtgagtgtggaaacaagtattggaatcat |
34149883 |
T |
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| Q |
128 |
ggatgtcgaattggggatgatgacatttta |
157 |
Q |
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|| | |||||||||||||| ||||||| |
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| T |
34149884 |
gggtactgaattggggatgatttcatttta |
34149913 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 34177330 - 34177211
Alignment:
| Q |
28 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
127 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||| | | |||||||||||||| ||| ||||||| | ||||||||||||||||||||| |
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| T |
34177330 |
cctcttctcaatttgtgtaattgcaaaatgaaagaaaaaga-aaaagagaatcatggtga---------tggtgagtgtggaaacaagtattggaatcat |
34177241 |
T |
|
| Q |
128 |
ggatgtcgaattggggatgatgacatttta |
157 |
Q |
| |
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|| | |||||||||||||| ||||||| |
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|
| T |
34177240 |
gggtactgaattggggatgatttcatttta |
34177211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 37657385 - 37657422
Alignment:
| Q |
23 |
aacctcctcctctcaatttgtgtaattgcaaaatgaaa |
60 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |
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|
| T |
37657385 |
aaccccctcttctcaatttgtgtaattgcaaaatgaaa |
37657422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 31279146 - 31279094
Alignment:
| Q |
160 |
ggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgt |
212 |
Q |
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||||||||||||||| || ||||| |||||||||| ||| || |||||||||| |
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| T |
31279146 |
ggtcttcttaggtcgatgtcgttacttttcaaggaagatgatgttgttgatgt |
31279094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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