View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_264 (Length: 240)

Name: NF11309A_low_264
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_264
NF11309A_low_264
[»] chr6 (1 HSPs)
chr6 (17-172)||(595611-595759)
[»] chr1 (9 HSPs)
chr1 (82-172)||(5458686-5458776)
chr1 (17-82)||(11943717-11943782)
chr1 (17-77)||(38741264-38741324)
chr1 (18-77)||(50158869-50158928)
chr1 (17-73)||(2123631-2123687)
chr1 (17-77)||(33403714-33403774)
chr1 (89-171)||(2123729-2123810)
chr1 (96-171)||(38741083-38741157)
chr1 (89-171)||(50158690-50158771)
[»] chr7 (5 HSPs)
chr7 (17-83)||(36616917-36616983)
chr7 (17-77)||(46912976-46913036)
chr7 (93-161)||(18103490-18103558)
chr7 (17-63)||(18104488-18104534)
chr7 (89-171)||(46913332-46913413)
[»] chr5 (6 HSPs)
chr5 (17-77)||(25981416-25981476)
chr5 (17-77)||(3059249-3059309)
chr5 (83-171)||(25981235-25981322)
chr5 (17-77)||(34225955-34226015)
chr5 (83-171)||(3059069-3059156)
chr5 (83-147)||(14395960-14396023)
[»] chr3 (4 HSPs)
chr3 (17-77)||(50386116-50386176)
chr3 (17-77)||(497741-497801)
chr3 (82-160)||(497893-497972)
chr3 (121-171)||(50385953-50386003)
[»] chr2 (1 HSPs)
chr2 (17-77)||(917987-918047)
[»] chr8 (2 HSPs)
chr8 (17-77)||(29246884-29246944)
chr8 (17-77)||(35702096-35702156)
[»] chr4 (2 HSPs)
chr4 (17-77)||(2917669-2917729)
chr4 (96-171)||(2917835-2917909)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 595759 - 595611
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtgtgcgtgccagaaatcgatctcagcacatacaattaatcc 116  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||     |||  || ||||||||||||| ||||||||| ||||    
T  595759 tatatatattaacaaagtaaaacattgatatcttaaatgctacagataaatggtttggg-----gtg--agcaatcgatctcagcccatacaattcatcc 595667  T
Q  117 atctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttatac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595666 atctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttatac 595611  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 5458686 - 5458776
Alignment:
Q  82 tgccagaaatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttatac 172  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5458686 tgccaggaatcgatctcaacacatacaattcatccatctagcacataccaccaagccaagaaagaaattgtgatatgttgacgacttatac 5458776  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 11943717 - 11943782
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtgtgcgt 82  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||    
T  11943717 tatatatattaacaaagtaaaacattgacaccttaaatgctacatataaatggtttgggtgagcgt 11943782  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 38741324 - 38741264
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  38741324 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttgggtg 38741264  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 50158928 - 50158869
Alignment:
Q  18 atatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  50158928 atatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttgggtg 50158869  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 2123631 - 2123687
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttg 73  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  2123631 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttg 2123687  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33403774 - 33403714
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||    
T  33403774 tatatatattaacaaagtaaaacattgttaccttaaatgctatagataagtggtttgggtg 33403714  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 2123729 - 2123810
Alignment:
Q  89 aatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    |||||| |||||||||| |||||  |||||| ||||||||||| |||||||||||||||||| | |||||||  |||||||||    
T  2123729 aatcgaactcagcacattcaattcgtccatc-agcacataccattgagccaagaaagaaattctaatatgtttgcgacttata 2123810  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 38741157 - 38741083
Alignment:
Q  96 ctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    |||||||||| |||||  |||||| ||||||||||||||||||||||||||| || | |||||||  |||||||||    
T  38741157 ctcagcacattcaattcgtccatc-agcacataccactgagccaagaaagaagttctaatatgtttgcgacttata 38741083  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 50158771 - 50158690
Alignment:
Q  89 aatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    |||||| |||||||||| ||||| ||||||| | ||||||||| ||||||||||||||| || | |||||||  |||||||||    
T  50158771 aatcgaactcagcacattcaattcatccatcaa-cacataccattgagccaagaaagaagttctaatatgtttgcgacttata 50158690  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 36616917 - 36616983
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtgtgcgtg 83  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||    
T  36616917 tatatatattaacaaagtaaaacattcttaccttaaatgctacagataaatggtttgggtgagcgtg 36616983  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 46912976 - 46913036
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  46912976 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttgggtg 46913036  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 18103558 - 18103490
Alignment:
Q  93 gatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttg 161  Q
    ||||||| ||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||||||||||    
T  18103558 gatctcaacacatacaattcatctatcaagcacataccattgagtcaagaaagaaattgtgatatgttg 18103490  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 18104534 - 18104488
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagat 63  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||    
T  18104534 tatatatattaataaagtaacacattgatacattaaatgctacagat 18104488  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 46913332 - 46913413
Alignment:
Q  89 aatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    |||||| |||||||||| |||||  |||||| ||||||||||||| ||||||||||||| || | |||||||  |||||||||    
T  46913332 aatcgaactcagcacattcaattcgtccatc-agcacataccactaagccaagaaagaagttctaatatgtttgcgacttata 46913413  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 25981476 - 25981416
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  25981476 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttgggtg 25981416  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 3059309 - 3059249
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||    
T  3059309 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtgatttgggtg 3059249  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 25981322 - 25981235
Alignment:
Q  83 gccagaaatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    ||||| |||||| |||||||||| |||||  |||||| ||||||||||| ||||||||||||||| || |||||||||  |||||||||    
T  25981322 gccaggaatcgaactcagcacattcaattcgtccatc-agcacataccattgagccaagaaagaagttctgatatgtttgcgacttata 25981235  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 34226015 - 34225955
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||| ||||||  ||||||| || |||||| |||||||||||    
T  34226015 tatatatattaacaaagtaaaactttgataacttaaatgttatagataagtggtttgggtg 34225955  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 3059156 - 3059069
Alignment:
Q  83 gccagaaatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    ||||| |||||| |||| ||||| |||||  ||||||  |||||||||||||||||||||||||| || | |||||||  |||||||||    
T  3059156 gccaggaatcgaactcaacacattcaattcgtccatcc-gcacataccactgagccaagaaagaagttctaatatgtttgcgacttata 3059069  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 14395960 - 14396023
Alignment:
Q  83 gccagaaatcgatctcagcacatacaattaatccatctagcacataccactgagccaagaaagaa 147  Q
    ||||| |||| | |||||||||| |||||  |||||| ||||||||||| |||||||||||||||    
T  14395960 gccaggaatcaaactcagcacattcaattcgtccatc-agcacataccattgagccaagaaagaa 14396023  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 50386176 - 50386116
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  50386176 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttgggtg 50386116  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 497741 - 497801
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    |||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||    
T  497741 tatatatattaacaaagtaaaacattaataccttaaatgctatagataagtggtttgggtg 497801  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 497893 - 497972
Alignment:
Q  82 tgccagaaatcgatctcagcacat--acaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgtt 160  Q
    |||||| |||||| ||||||||||  |||||| |||||||  ||||| |||||||||||||||||||| || |||||||||    
T  497893 tgccaggaatcgaactcagcacattcacaatttatccatcc-gcacaaaccactgagccaagaaagaagttctgatatgtt 497972  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 50386003 - 50385953
Alignment:
Q  121 agcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    ||||||||||| ||||||||||||||| || |||||||||  |||||||||    
T  50386003 agcacataccattgagccaagaaagaagttctgatatgtttgcgacttata 50385953  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 918047 - 917987
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  918047 tatatatattaacaaagtaaaacattgataccttaaatgctatagataagtggtttgggtg 917987  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 29246884 - 29246944
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||    
T  29246884 tatatatattaacaaagtataacattgataccttaaatgctatagataagtggtttgggtg 29246944  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 35702156 - 35702096
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    |||||||||||||||||||||||||||| || |||||  ||||||  ||||| ||||||||    
T  35702156 tatatatattaacaaagtaaaacattgacaccttaaacactacagcaaaatgatttgggtg 35702096  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 2917669 - 2917729
Alignment:
Q  17 tatatatattaacaaagtaaaacattgatactttaaatgctacagataaatggtttgggtg 77  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||    
T  2917669 tatatatattaacaaagtaaaacattgatatcttaaatgctatagataagtggtttgggtg 2917729  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 2917835 - 2917909
Alignment:
Q  96 ctcagcacatacaattaatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttata 171  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||||||| || |||||||||  |||||||||    
T  2917835 ctcagcacattcaattcatccatcc-gcacataccactgagccaagaaagaagttctgatatgtttgcgacttata 2917909  T

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