View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_265 (Length: 240)
Name: NF11309A_low_265
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_265 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33900604 - 33900365
Alignment:
| Q |
1 |
ataagaaccatagatgttnnnnnnncaggaacagtaaaaaccaaactccaaattaataatttaaagtatctattaatttcctcttgtttatgtgcttttc |
100 |
Q |
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| T |
33900604 |
ataagaaccatagatgttaaaaaaacaggaacagtaaaaaccaaactccaaattaataatttaaagtatctattaatttcctcttgtttatgtgcttttc |
33900505 |
T |
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| Q |
101 |
ttccaccatcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttata |
200 |
Q |
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| T |
33900504 |
ttccaccatcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttata |
33900405 |
T |
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| Q |
201 |
agttaagacaattttattaatgtctaaatatgtttctatg |
240 |
Q |
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| T |
33900404 |
agttaagacaattttattaatgtctaaatatgtttctatg |
33900365 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 42516197 - 42516318
Alignment:
| Q |
100 |
cttccaccatcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttat |
199 |
Q |
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| T |
42516197 |
cttccacagtcatttagaaatatcatggctctaaaacaacctgatactttagactcaattacatcaatgaaggtttttggtccagttatatatggtttat |
42516296 |
T |
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| Q |
200 |
aagttaagacaattttattaat |
221 |
Q |
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| T |
42516297 |
aaattaagacaatttttttaat |
42516318 |
T |
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