View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_266 (Length: 240)
Name: NF11309A_low_266
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_266 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 53795702 - 53795502
Alignment:
| Q |
15 |
cagcttttattttctttaagaatatcattactagtctgaaattaatctaattatgcatgcatatgcaagaaataatacttgactcatgggtgatacttca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53795702 |
cagcttttattttctttaagaatatcattactagtctgaaattaatctaactatgcatgcatatgcaagaaataatacttgactcatgggtgatacttca |
53795603 |
T |
|
| Q |
115 |
aaaattaaaatttcctatccatataaatgaatattttctaagatcataataaattgtcaccatcaatgttgtatatagcataataagttagactcctaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53795602 |
aaaattaaaatttcctatccatataaatgaatattttctaagatcataataaattgtcaccatcaatgttgtatatagcataataagttatactcctaca |
53795503 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
53795502 |
a |
53795502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University