View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_268 (Length: 240)
Name: NF11309A_low_268
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_268 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 52478375 - 52478151
Alignment:
| Q |
9 |
caagaagcaaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcaccgttataattaacttataca |
108 |
Q |
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| T |
52478375 |
caagaagcaaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcaccgttataatttacttataca |
52478276 |
T |
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| Q |
109 |
aataaaaaacggtaaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactca |
208 |
Q |
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| T |
52478275 |
aataataaa-ggtaaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactca |
52478177 |
T |
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| Q |
209 |
tgaccatgactatctaatgttaattt |
234 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52478176 |
tgaccatgactatctaatgttaattt |
52478151 |
T |
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