View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_269 (Length: 240)
Name: NF11309A_low_269
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_269 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 36570713 - 36570881
Alignment:
| Q |
27 |
accaccaactgaaaaggcaaaaattatcagcagccacaactccttgtttctactacccattcaattaaaattgattttcaccaaaaactccttatttcct |
126 |
Q |
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||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36570713 |
accaccaactgaaaaagcaaacattatcagcatccacaactccttgtttctactacccattcaattaaaattgattttcaccaaaaactccttatttccg |
36570812 |
T |
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| Q |
127 |
gatgaacatttgatgatattgtgttcttcagatctgcattgataaaccctttatttctgtaattttgaa |
195 |
Q |
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| T |
36570813 |
gatgaacatttgatgatattgtgttcttcagatctgcattgataaaccctttatttctggaattttgaa |
36570881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 52603896 - 52603725
Alignment:
| Q |
27 |
accaccaactgaaaaggcaaaaattatcagcagccacaactccttgtttctactacccattcaattaaaattgattttcaccaaaaactccttatttcct |
126 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
52603896 |
accaccaactgaaaaggcaaacattatcaacagccacaactccttgtttctactacccattcaattaaaattgattttcgccaaaaactccttctttcct |
52603797 |
T |
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| Q |
127 |
gatgaacatttgatgatattgtgttcttcagatctgcattgataaaccctttatttctgtaattttgaatct |
198 |
Q |
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| T |
52603796 |
gatgaacatttgatgatattgtgttcttcagatctacattgataaaacctttatttctggaattttgaatct |
52603725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 32453637 - 32453695
Alignment:
| Q |
28 |
ccaccaactgaaaaggcaaaaattatcagcagccacaactccttgtttctactacccat |
86 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
32453637 |
ccaccaactgaaaaggcaagcattatcagcagcagcaactccttgtttctaccacccat |
32453695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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