View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_27 (Length: 432)
Name: NF11309A_low_27
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 41357546 - 41357123
Alignment:
| Q |
12 |
atgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatct |
111 |
Q |
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| T |
41357546 |
atgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatct |
41357447 |
T |
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| Q |
112 |
aaagatctctatagcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaacaac |
203 |
Q |
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| T |
41357446 |
aaagatctctatagcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaacaac |
41357347 |
T |
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| Q |
204 |
gcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaa |
303 |
Q |
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| T |
41357346 |
gcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaa |
41357247 |
T |
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| Q |
304 |
caagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgcta |
403 |
Q |
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| T |
41357246 |
caagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgcta |
41357147 |
T |
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| Q |
404 |
taccgctatttgacgccactttgt |
427 |
Q |
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| T |
41357146 |
taccgctatttgacgccactttgt |
41357123 |
T |
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