View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_270 (Length: 240)
Name: NF11309A_low_270
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_270 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 2285783 - 2285987
Alignment:
| Q |
22 |
caagtagtggttgggatccaattgcttatggttttaaagctgaatatgatgttgtggaaatggttattcataatcctggcgttgaagaagatcccgcttg |
121 |
Q |
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| T |
2285783 |
caagtagtggttgggatccaattgcttatggttttaaagctgaatatgatgttgtggaaatggttattcataatcctggtgttgaagaagatcctgcttg |
2285882 |
T |
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| Q |
122 |
tggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttctttttctatataaatctcttc |
221 |
Q |
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| T |
2285883 |
tggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttctttttctatataaatctcttc |
2285982 |
T |
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| Q |
222 |
atttc |
226 |
Q |
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||||| |
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| T |
2285983 |
atttc |
2285987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 2289652 - 2289761
Alignment:
| Q |
108 |
gaagatcccgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttctttttct |
207 |
Q |
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| T |
2289652 |
gaagatcctgcttgtggacttcttaatgattctgttgctcttagga--ctctatcctcctaaagcttctaatagtaagt-tctactttctttctttttct |
2289748 |
T |
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| Q |
208 |
atataaatctctt |
220 |
Q |
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| T |
2289749 |
acataaatctctt |
2289761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 44409144 - 44409193
Alignment:
| Q |
97 |
ctggcgttgaagaagatcccgcttgtggtcctcttattgattctgttgct |
146 |
Q |
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| T |
44409144 |
ctggtgttgaagatgatccagcttgtggtccacttattgattctgttgct |
44409193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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