View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_273 (Length: 239)
Name: NF11309A_low_273
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_273 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 45002351 - 45002523
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattactcgttaaaaaagcctcatattatagtccattttaggcctcaaaatatgttgagccggctgtatgtcatagtg |
142 |
Q |
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| T |
45002351 |
ataaaacctatgaatttatattaattactcgttaaaaaaacctcatattatagtccgttttaggcctcaaaatatgttgagccggctgtatgtcatagtg |
45002450 |
T |
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| Q |
143 |
atggccgagtgaaaatccaatcttatggagaattgtgtatatattgaatgattttaagaaggtaaataatatt |
215 |
Q |
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| T |
45002451 |
atggccgagtgagaatccaatcttatgaagaattgtgtatatattgaatgattttaagaaggtaaatagtatt |
45002523 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 16649205 - 16649290
Alignment:
| Q |
45 |
aaaacctatgaatttatattaattactcg--ttaaaaaagcctcatattatagtccattttaggcctcaaaatatgttgagccggc |
128 |
Q |
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| T |
16649205 |
aaaacctatgaatttatattaatttctctcattaaaaaagcctcgtattatagtccgttttaggcctcaaaatgtgttgggccggc |
16649290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 22382585 - 22382663
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattactcgttaaaaaagcctcatattatagtccattttaggcctcaaaatatgttg |
121 |
Q |
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| T |
22382585 |
ataaaacctatgaatttatattaattactcattaaaaaagccttatattatagcccactttaagcctcaaaatatgttg |
22382663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 10329050 - 10328965
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattactcgttaaaaaagcctcatattatagtccattttaggcctcaaaatatgttgagccggc |
128 |
Q |
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| T |
10329050 |
ataaaacctacgaatttatattaattactcatttaaaaagcctcatattatagtctgctttaggcctcaaaatgtgttgggccggc |
10328965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 6876541 - 6876488
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattac--tcgttaaaaaagcctcatattata |
94 |
Q |
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|||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
6876541 |
ataaaacctatgaatttatattaattactttcattaaagaagcctcatattata |
6876488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 26897248 - 26897164
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattactcgtt-aaaaaagcctcatattatagtccattttaggcctcaaaatatgttgagccg |
126 |
Q |
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|||||||||||||||||||||||||||||| || |||||| | |||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
26897248 |
ataaaacctatgaatttatattaattactcattaaaaaaaacttcatattatagtccgttttaggcctcaaaataagttgggccg |
26897164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 37050193 - 37050156
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattactcgttaaaaa |
80 |
Q |
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| T |
37050193 |
ataaaacctatgaatttatattaattactcattaaaaa |
37050156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 52240691 - 52240606
Alignment:
| Q |
43 |
ataaaacctatgaatttatattaattactcgttaaaaaagcctcatattatagtccattttaggcctcaaaatatgttgagccggc |
128 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||||||| | | ||||||||||||||| ||||| |||||| |
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| T |
52240691 |
ataaaacctatgaatttatattaattactaattaaaaaagcctcttattatattgcgctttaggcctcaaaatgtgttgggccggc |
52240606 |
T |
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