View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_274 (Length: 239)
Name: NF11309A_low_274
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_274 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 31506658 - 31506890
Alignment:
| Q |
7 |
gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg |
106 |
Q |
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| T |
31506658 |
gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg |
31506757 |
T |
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| Q |
107 |
cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga |
206 |
Q |
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| T |
31506758 |
cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga |
31506857 |
T |
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| Q |
207 |
cttggctgagtctgccttcgttcataaataaga |
239 |
Q |
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| T |
31506858 |
cttggctgagtctgctttcattcataaataaga |
31506890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 34496101 - 34495869
Alignment:
| Q |
7 |
gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34496101 |
gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattg |
34496002 |
T |
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| Q |
107 |
cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga |
206 |
Q |
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| T |
34496001 |
cttaccttcaagctggtgctggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga |
34495902 |
T |
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| Q |
207 |
cttggctgagtctgccttcgttcataaataaga |
239 |
Q |
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| T |
34495901 |
cttggctgagtctgctttcgttcataaataaga |
34495869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 27607648 - 27607416
Alignment:
| Q |
7 |
gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27607648 |
gacatagctctagctctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattg |
27607549 |
T |
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| Q |
107 |
cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga |
206 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607548 |
cttaccttcaagctggtgcaggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga |
27607449 |
T |
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| Q |
207 |
cttggctgagtctgccttcgttcataaataaga |
239 |
Q |
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| T |
27607448 |
cttggctgagtctgctttcgttcataaataaga |
27607416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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