View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_275 (Length: 239)
Name: NF11309A_low_275
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_275 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 38322605 - 38322840
Alignment:
| Q |
4 |
atgtgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactaaatggtcaatgtaatcatatttatgaacttatgatctt |
103 |
Q |
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| T |
38322605 |
atgtgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactatatggtcaatgtaatcatatttatgaacttatgatctt |
38322704 |
T |
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| Q |
104 |
attaattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtgatgctcaagtaaatgcctcaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
38322705 |
attaattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtaatgctcaaataaatgcctcaa |
38322804 |
T |
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| Q |
204 |
tttcagaatctaaagtccatccttcagagattgaag |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38322805 |
tttcagaatctaaagtccatccttcagagattgaag |
38322840 |
T |
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