View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_278 (Length: 238)
Name: NF11309A_low_278
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_278 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5898390 - 5898625
Alignment:
| Q |
1 |
aggtacttatccacaatcacaaaaatcaatttagcttttccttgaagaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgttaacat |
100 |
Q |
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| T |
5898390 |
aggtacttatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgttaacat |
5898489 |
T |
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| Q |
101 |
cctaaatcaaggatagctacattcgttagaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactccctcat |
200 |
Q |
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| T |
5898490 |
cctaaatcaaggatagctacattcgttggaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactccctcat |
5898589 |
T |
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| Q |
201 |
taacaattctcctgatataagcagctctggttcttc |
236 |
Q |
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|||||||||| ||||| ||||||||||||||||||| |
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| T |
5898590 |
taacaattcttctgatctaagcagctctggttcttc |
5898625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5860211 - 5860445
Alignment:
| Q |
1 |
aggtacttatccacaatcacaaaaatcaatttagcttttccttgaagaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgttaacat |
100 |
Q |
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||||| ||||| |||||||||||| ||| |||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5860211 |
aggtagttatctacaatcacaaaa-tcattttagcttttccttgatgatcattgaccaaactggttcaaaggttaaggaaaaaatgaatggtgttaacat |
5860309 |
T |
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| Q |
101 |
cctaaatcaaggatagctacattcgttagaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactccctcat |
200 |
Q |
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| T |
5860310 |
cctaaatcaaggatagctacattcgttggagctatgaccataagaatctgttgcagcaactgtagcaagtcggcctgtgtcattcttcaaactccctcat |
5860409 |
T |
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| Q |
201 |
taacaattctcctgatataagcagctctggttcttc |
236 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
5860410 |
taacaattctcctgatctaagcagctctggttcttc |
5860445 |
T |
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